Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063153 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52180.1 | PGSC0003DMT400063153 | AT3G29160.1 | 12148529 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039423 | Potato | mitochondrion, plastid | 87.57 | 87.1 |
| Solyc11g007830.1.1 | Tomato | plastid | 85.41 | 85.41 |
| KRG92090 | Soybean | plastid | 68.38 | 68.19 |
| KRH34699 | Soybean | nucleus | 68.11 | 67.92 |
| VIT_00s0250g00020.t01 | Wine grape | mitochondrion | 67.57 | 66.14 |
| Bra006908.1-P | Field mustard | plastid | 61.08 | 64.02 |
| CDY72539 | Canola | cytosol | 42.16 | 62.9 |
| CDY23194 | Canola | cytosol, plastid | 62.43 | 61.27 |
| AT3G52180.1 | Thale cress | plastid | 62.43 | 60.95 |
| CDX78070 | Canola | mitochondrion, plastid | 59.46 | 58.36 |
| CDX73654 | Canola | mitochondrion, plastid | 58.92 | 57.82 |
| KXG40392 | Sorghum | plastid | 56.76 | 56.3 |
| TraesCS4B01G360800.2 | Wheat | plastid | 55.95 | 56.1 |
| TraesCS4D01G353800.1 | Wheat | plastid | 55.41 | 55.56 |
| TraesCS5A01G529100.1 | Wheat | plastid | 55.14 | 55.28 |
| GSMUA_Achr8P14150_001 | Banana | cytosol, golgi, mitochondrion, plastid | 61.62 | 54.68 |
| Zm00001d027309_P007 | Maize | plastid | 57.03 | 53.96 |
| HORVU4Hr1G086650.11 | Barley | plastid | 54.32 | 51.41 |
| PGSC0003DMT400074765 | Potato | cytosol | 22.97 | 39.53 |
| Bra033449.1-P | Field mustard | cytosol | 58.92 | 39.49 |
| PGSC0003DMT400077364 | Potato | plastid | 24.59 | 15.37 |
Protein Annotations
| EntrezGene:102588091 | Gene3D:2.60.40.10 | MapMan:3.2.3.2.1 | Gene3D:3.90.190.10 | ProteinID:ABB87109 | ProteinID:ABB87109.1 |
| InterPro:AMPK1_CBM | EMBL:DQ241838 | InterPro:DSP4 | InterPro:Dual-sp_phosphatase_cat-dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005975 | GO:GO:0005982 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0007623 | GO:GO:0008138 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016311 | GO:GO:0016787 | GO:GO:0016791 |
| GO:GO:0019203 | GO:GO:0019538 | InterPro:IPR000387 | InterPro:IPR013783 | InterPro:IPR020422 | InterPro:IPR029021 |
| InterPro:Ig-like_fold | InterPro:Ig_E-set | UniProt:M1CLX9 | PFAM:PF00782 | PFAM:PF16561 | EnsemblPlantsGene:PGSC0003DMG400027327 |
| PGSC:PGSC0003DMG400027327 | EnsemblPlants:PGSC0003DMT400070294 | PFscan:PS50054 | PFscan:PS50056 | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF58 |
| InterPro:Prot-tyrosine_phosphatase-like | SMART:SM00195 | SUPFAM:SSF52799 | SUPFAM:SSF81296 | InterPro:TYR_PHOSPHATASE_DUAL_dom | InterPro:TYR_PHOSPHATASE_dom |
| UniParc:UPI000294B947 | RefSeq:XP_006360508.1 | SEG:seg | : | : | : |
Description
Protein tyrosine phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400027327]
Coordinates
chr11:-:4344685..4351245
Molecular Weight (calculated)
41571.3 Da
IEP (calculated)
4.693
GRAVY (calculated)
-0.287
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCLQNLPRS SGLPLRSFTG NSRKPFSTVV SLGMTKFADQ RLSIVAQVVS GPESSTEKDE EKSDTYSHDM TAAMGAVLTY RHDLGMNYNF IRPDLIVGSC
101: LQTPEDVDKL RSIGVKTIFC LQQNPDLEYF GVDINAIREY ANKCGDIEHL RAEIRDFDAF DLRLRLPAVI SILNNAINRN GGVTYIHCTA GIGRAPAVAL
201: TYMFWVQSYK LSEAFDLLMS KRSCFPKLDA IKSATADVLT GLKKMPVTLT WHGDNCTTVE ISGLDIGWGQ RTPLKFDEER GLWTLQKDLH EGIYEYKYIV
301: DGEWICNEFE PITSPNKDGH VNNYVEVLDE NPDNITSVAV RKRLTGDDPD LTSDERLIIE QFLEAYADVE
101: LQTPEDVDKL RSIGVKTIFC LQQNPDLEYF GVDINAIREY ANKCGDIEHL RAEIRDFDAF DLRLRLPAVI SILNNAINRN GGVTYIHCTA GIGRAPAVAL
201: TYMFWVQSYK LSEAFDLLMS KRSCFPKLDA IKSATADVLT GLKKMPVTLT WHGDNCTTVE ISGLDIGWGQ RTPLKFDEER GLWTLQKDLH EGIYEYKYIV
301: DGEWICNEFE PITSPNKDGH VNNYVEVLDE NPDNITSVAV RKRLTGDDPD LTSDERLIIE QFLEAYADVE
001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV
Arabidopsis Description
DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.