Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0108g01230.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52180.1 | VIT_14s0108g01230.t01 | AT3G29160.1 | 12148529 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34699 | Soybean | nucleus | 67.99 | 69.27 |
| KRG92090 | Soybean | plastid | 67.46 | 68.73 |
| PGSC0003DMT400070294 | Potato | plastid | 66.14 | 67.57 |
| Solyc03g111160.2.1 | Tomato | mitochondrion, plastid | 66.4 | 67.47 |
| PGSC0003DMT400039423 | Potato | mitochondrion, plastid | 65.87 | 66.94 |
| Solyc11g007830.1.1 | Tomato | plastid | 64.55 | 65.95 |
| CDY72539 | Canola | cytosol | 42.33 | 64.52 |
| Bra006908.1-P | Field mustard | plastid | 58.99 | 63.17 |
| AT3G52180.1 | Thale cress | plastid | 62.7 | 62.53 |
| CDY23194 | Canola | cytosol, plastid | 62.17 | 62.33 |
| CDX78070 | Canola | mitochondrion, plastid | 59.52 | 59.68 |
| KXG40392 | Sorghum | plastid | 58.73 | 59.52 |
| TraesCS4B01G360800.2 | Wheat | plastid | 57.67 | 59.08 |
| CDX73654 | Canola | mitochondrion, plastid | 58.73 | 58.89 |
| TraesCS4D01G353800.1 | Wheat | plastid | 57.41 | 58.81 |
| TraesCS5A01G529100.1 | Wheat | plastid | 56.88 | 58.27 |
| Zm00001d027309_P007 | Maize | plastid | 58.47 | 56.52 |
| HORVU4Hr1G086650.11 | Barley | plastid | 56.88 | 54.99 |
| GSMUA_Achr8P14150_001 | Banana | cytosol, golgi, mitochondrion, plastid | 60.05 | 54.44 |
| Bra033449.1-P | Field mustard | cytosol | 58.73 | 40.22 |
| VIT_13s0067g02510.t01 | Wine grape | plastid | 26.72 | 35.69 |
| VIT_14s0066g01200.t01 | Wine grape | plastid | 21.96 | 14.24 |
Protein Annotations
| EntrezGene:100246216 | wikigene:100246216 | Gene3D:2.60.40.10 | MapMan:3.2.3.2.1 | Gene3D:3.90.190.10 | EMBL:AM450462 |
| InterPro:AMPK1_CBM | ProteinID:CAN65362 | ProteinID:CAN65362.1 | ProteinID:CBI23430 | ProteinID:CBI23430.3 | UniProt:D7SYX3 |
| InterPro:DSP4 | InterPro:Dual-sp_phosphatase_cat-dom | EMBL:FN595263 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0005982 |
| GO:GO:0005983 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0007623 | GO:GO:0008138 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0016311 | GO:GO:0016787 | GO:GO:0016791 | GO:GO:0019203 | GO:GO:0019538 | GO:GO:0030246 |
| GO:GO:0030247 | GO:GO:2001066 | InterPro:IPR000387 | InterPro:IPR013783 | InterPro:IPR020422 | InterPro:IPR029021 |
| InterPro:Ig-like_fold | InterPro:Ig_E-set | EntrezGene:LOC100246216 | wikigene:LOC100246216 | PFAM:PF00782 | PFAM:PF16561 |
| PFscan:PS50054 | PFscan:PS50056 | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF58 | InterPro:Prot-tyrosine_phosphatase-like | SMART:SM00195 |
| SUPFAM:SSF52799 | SUPFAM:SSF81296 | TIGR:TC62476 | InterPro:TYR_PHOSPHATASE_DUAL_dom | InterPro:TYR_PHOSPHATASE_dom | UniParc:UPI00015C952A |
| ArrayExpress:VIT_00s0250g00020 | EnsemblPlantsGene:VIT_00s0250g00020 | EnsemblPlants:VIT_00s0250g00020.t01 | unigene:Vvi.7921 | RefSeq:XP_002263116 | RefSeq:XP_002263116.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:17252509..17266683
Molecular Weight (calculated)
42774.8 Da
IEP (calculated)
5.907
GRAVY (calculated)
-0.399
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCLQNLPRS SALPLQSFNC HGRKAICSVH NLGVMNKTVD LHRSIAAKAI SGSISDTKMS DPEFKEEKSE IYSNNMTEAM GAVLTYRHEL GMNYNFIRPD
101: LIVGSCLQSP EDVDKLRSIG VKTIFCLQQD SDLEYFGVDI NAIIEYANTF DDIQHLRAEI RDFDAFDLRL QLPAVVSKLY KAINRNGGVT YIHCTAGLGR
201: APAVALAYMF WVQGYKLNEA HSLLMSKRSS FPKLDAIKSA TADILTDLKK QPVTLKWKDN SCTTVEISGL DIGWGQRMPL RFDKEQDLWI LERELPEGHY
301: EYKYIVDGEW TCNEHEHVRA PNKDGHVNNY VHVFDSDPHG VSAVLRKRLT GDDDPTLSRD ERLKIRQILE ACSEDDDA
101: LIVGSCLQSP EDVDKLRSIG VKTIFCLQQD SDLEYFGVDI NAIIEYANTF DDIQHLRAEI RDFDAFDLRL QLPAVVSKLY KAINRNGGVT YIHCTAGLGR
201: APAVALAYMF WVQGYKLNEA HSLLMSKRSS FPKLDAIKSA TADILTDLKK QPVTLKWKDN SCTTVEISGL DIGWGQRMPL RFDKEQDLWI LERELPEGHY
301: EYKYIVDGEW TCNEHEHVRA PNKDGHVNNY VHVFDSDPHG VSAVLRKRLT GDDDPTLSRD ERLKIRQILE ACSEDDDA
001: MNCLQNLPRC SVSPLLGFGC IQRDHSSSSS SLKMLISPPI KANDPKSRLV LHAVSESKSS SEMSGVAKDE EKSDEYSQDM TQAMGAVLTY RHELGMNYNF
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV
101: IRPDLIVGSC LQTPEDVDKL RKIGVKTIFC LQQDPDLEYF GVDISSIQAY AKKYSDIQHI RCEIRDFDAF DLRMRLPAVV GTLYKAVKRN GGVTYVHCTA
201: GMGRAPAVAL TYMFWVQGYK LMEAHKLLMS KRSCFPKLDA IRNATIDILT GLKRKTVTLT LKDKGFSRVE ISGLDIGWGQ RIPLTLDKGT GFWILKRELP
301: EGQFEYKYII DGEWTHNEAE PFIGPNKDGH TNNYAKVVDD PTSVDGTTRE RLSSEDPELL EEERSKLIQF LETCSEAEV
Arabidopsis Description
DSP4SEX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.