Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G466300.1 | Wheat | plastid | 93.89 | 92.94 |
| TraesCS1D01G440600.1 | Wheat | plastid | 94.06 | 88.64 |
| OQU80369 | Sorghum | mitochondrion | 77.93 | 83.76 |
| HORVU1Hr1G093880.2 | Barley | plastid | 88.12 | 82.51 |
| Os08t0379300-01 | Rice | plastid | 79.97 | 79.43 |
| Zm00001d032333_P004 | Maize | plastid | 77.59 | 76.68 |
| GSMUA_Achr9P07030_001 | Banana | plastid | 62.99 | 68.32 |
| VIT_14s0066g01200.t01 | Wine grape | plastid | 58.91 | 59.52 |
| Solyc12g062260.1.1 | Tomato | extracellular | 18.51 | 57.67 |
| PGSC0003DMT400077364 | Potato | plastid | 56.37 | 56.08 |
| CDX91945 | Canola | plastid | 54.16 | 55.0 |
| KRG94231 | Soybean | plastid | 54.84 | 54.84 |
| CDX74302 | Canola | plastid | 53.14 | 54.53 |
| KRH07193 | Soybean | plastid | 53.82 | 54.19 |
| AT3G01510.1 | Thale cress | plastid | 54.16 | 53.98 |
| Solyc12g062250.1.1 | Tomato | plastid | 51.27 | 52.71 |
| TraesCS5A01G148200.1 | Wheat | plastid | 11.21 | 23.4 |
| TraesCS5A01G529100.1 | Wheat | plastid | 14.43 | 23.04 |
Protein Annotations
| MapMan:18.4.23.2.3 | Gene3D:2.60.40.10 | Gene3D:3.90.190.10 | InterPro:AMPK1_CBM | InterPro:Dual-sp_phosphatase_cat-dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 |
| GO:GO:0005983 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008138 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009569 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0016311 | GO:GO:0016787 | GO:GO:0019203 | GO:GO:0019538 | GO:GO:0043036 | InterPro:IPR013783 |
| InterPro:IPR020422 | InterPro:IPR029021 | InterPro:Ig-like_fold | InterPro:Ig_E-set | InterPro:LSF1 | PFAM:PF00782 |
| PFAM:PF16561 | PFscan:PS50054 | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF57 | InterPro:Prot-tyrosine_phosphatase-like | SMART:SM00195 |
| SUPFAM:SSF52799 | SUPFAM:SSF81296 | InterPro:TYR_PHOSPHATASE_DUAL_dom | EnsemblPlantsGene:TraesCS1A01G431500 | EnsemblPlants:TraesCS1A01G431500.2 | TIGR:cd02859 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:583659941..583663916
Molecular Weight (calculated)
65945.1 Da
IEP (calculated)
9.709
GRAVY (calculated)
-0.336
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSLMPPSS IALLTPRGRV RAGSAARLPP PVFRVHAASS SRRRSGGRRR LTVVAATEEE GPAAAAGRMN LNEYMVAVDR PLGLRFALAV DGRVFVHSLK
101: RGGNAEKSRI IMVGDTLKKA GTVHNEGLVS IKDLGDTEMV LKQKSGPCNL VLERPVAPYP IHQLHQNEDY HILFNRGRVS LPTWNSAMLS SKLNKSSPRN
201: GKSGFAVFSP RLLSSQGWAL LSSEKDGLNR KSTNLANWMS EIVGFYSDED DMDAEWAHGS FPLEEYIKAL DRAKGELYYN HSLGMQYSKI TEKIYVGSCI
301: QTQKDVKMLS ETVGITSVLN FQSESERINW GINSEAINDS CRQNNILMIN YPIREVDSMD LRKKLPFSVG LLLRLIRKNY RIYVTCTTGY DRSPACVIAY
401: LHWVQDTPLH IAHKFITGLH SCRPDRAAIV WATWDLIALV ENGRHDGTPT HSVCFVWNNG REGEDVELVG DFTSNWKDKL KCNHKGGSRY EAEVRLRHGK
501: YYYKFIVGGN WRHSSSLPSE TDEHGNVNNV IRVGDIARIR PAPSQLQIKD PSVVKVIERA LTEDERFSLA FAARLMAFAI CPIRLAPKQ
101: RGGNAEKSRI IMVGDTLKKA GTVHNEGLVS IKDLGDTEMV LKQKSGPCNL VLERPVAPYP IHQLHQNEDY HILFNRGRVS LPTWNSAMLS SKLNKSSPRN
201: GKSGFAVFSP RLLSSQGWAL LSSEKDGLNR KSTNLANWMS EIVGFYSDED DMDAEWAHGS FPLEEYIKAL DRAKGELYYN HSLGMQYSKI TEKIYVGSCI
301: QTQKDVKMLS ETVGITSVLN FQSESERINW GINSEAINDS CRQNNILMIN YPIREVDSMD LRKKLPFSVG LLLRLIRKNY RIYVTCTTGY DRSPACVIAY
401: LHWVQDTPLH IAHKFITGLH SCRPDRAAIV WATWDLIALV ENGRHDGTPT HSVCFVWNNG REGEDVELVG DFTSNWKDKL KCNHKGGSRY EAEVRLRHGK
501: YYYKFIVGGN WRHSSSLPSE TDEHGNVNNV IRVGDIARIR PAPSQLQIKD PSVVKVIERA LTEDERFSLA FAARLMAFAI CPIRLAPKQ
001: MAFLQQISGL GALERSCPSI MIGSSFRSGN GRVFDGRGIA YLGSREKFGF NRRRRVVLRV VAMSSSSTPF KMNLNEYMVT LEKPLGIRFA LSADGKIFVH
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S
101: AIKKGSNAEK ARIIMVGDTL KKASDSSGGT LVEIKDFGDT KKMLVEKTGS FSLVLERPFS PFPIQYLLHL SDLDLLYNRG RVSFVTWNKN LLSSNLRASS
201: QGSGNSGYAA FSSKFFTPQG WKLLNRQSNS FQSGTKKNIL SPPISPLVSV FSEDVPGDGE WGYGNFPLEE YIKALDRSKG ELSYNHALGM RYSKITEQIY
301: VGSCIQTEED VENLSEAGIT AILNFQGGTE AQNWGIDSQS INDACQKSEV LMINYPIKDA DSFDLRKKLP LCVGLLLRLL KKNHRVFVTC TTGFDRSSAC
401: VIAYLHWMTD TSLHAAYSFV TGLHACKPDR PAIAWATWDL IAMVDDGKHD GTPTHSVTFV WNGHEGEEVL LVGDFTGNWK EPIKATHKGG PRFETEVRLT
501: QGKYYYKYII NGDWRHSATS PTERDDRGNT NNIIVVGDVA NVRPTIQQPR KDANIIKVIE RVLTESERFR LAKAARCIAF SVCPIRLCPK S
Arabidopsis Description
LSF1LSF1 [Source:UniProtKB/TrEMBL;Acc:A0A178V9M4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.