Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40396 | Canola | plasma membrane | 53.97 | 82.26 |
| CDY37357 | Canola | cytosol, plasma membrane, vacuole | 71.43 | 70.31 |
| CDY40394 | Canola | cytosol, plasma membrane, vacuole | 71.43 | 70.31 |
| CDY37353 | Canola | extracellular, plasma membrane, vacuole | 47.09 | 65.44 |
| CDY40395 | Canola | extracellular | 46.03 | 63.97 |
| AT2G01240.1 | Thale cress | extracellular, vacuole | 39.68 | 55.97 |
| CDY06028 | Canola | plastid | 4.23 | 3.19 |
Protein Annotations
| MapMan:13.7.2.1 | GO:A0A078HHY3 | UniProt:A0A078HHY3 | EnsemblPlants:CDY37356 | ProteinID:CDY37356 | ProteinID:CDY37356.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00063904001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EE8134 | SEG:seg |
Description
BnaC02g33740DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHY3]
Coordinates
chrLK032398:-:200046..201115
Molecular Weight (calculated)
21827.3 Da
IEP (calculated)
4.532
GRAVY (calculated)
0.593
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVDQMLGE GAVADLSVWK NKITSGITLV MATLIWFQFE IMETEPVPFL CSILLLLTLL LFIWVKYGHH LFTWIPPTPE ELQQEDSPVR ALLSEIEGLL
101: LMLYEIAYGE DIKTFIWAIL YVAIIYTIGS YINLLTIFYI CLVCLLTIPV MYLQYQEVVD DFIGEVSEMK NKTLQLLNCR ATKKKKKLY
101: LMLYEIAYGE DIKTFIWAIL YVAIIYTIGS YINLLTIFYI CLVCLLTIPV MYLQYQEVVD DFIGEVSEMK NKTLQLLNCR ATKKKKKLY
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.