Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37353 | Canola | extracellular, plasma membrane, vacuole | 62.1 | 56.62 |
| CDY40395 | Canola | extracellular | 60.48 | 55.15 |
| CDY37356 | Canola | plasma membrane | 82.26 | 53.97 |
| AT2G01240.1 | Thale cress | extracellular, vacuole | 54.03 | 50.0 |
| CDY37357 | Canola | cytosol, plasma membrane, vacuole | 63.71 | 41.15 |
| CDY40394 | Canola | cytosol, plasma membrane, vacuole | 62.9 | 40.62 |
| CDY06028 | Canola | plastid | 7.26 | 3.59 |
Protein Annotations
| EnsemblPlants:CDY40396 | EnsemblPlantsGene:GSBRNA2T00069596001 | GO:A0A078HRR4 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 |
| ProteinID:CDY40396 | ProteinID:CDY40396.1 | TMHMM:TMhelix | UniParc:UPI0004EDD2EC | UniProt:A0A078HRR4 | MapMan:35.1 |
Description
BnaA02g27100DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRR4]
Coordinates
chrLK032469:-:228729..229462
Molecular Weight (calculated)
14350.8 Da
IEP (calculated)
5.107
GRAVY (calculated)
0.410
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDLVTPDPA SLHLGQLQQE DSPVRALFSE IEGLLLMLYE IAYGEDIKTF IWAILYVAII YTIGSYINLL TIFYICLVCL LTIPVLYLQY QEVVDNFIGE
101: VSEMKNKTLR LFNSRATKKK KKLY
101: VSEMKNKTLR LFNSRATKKK KKLY
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.