Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37353 | Canola | extracellular, plasma membrane, vacuole | 88.97 | 88.97 |
| CDY40396 | Canola | plasma membrane | 55.15 | 60.48 |
| AT2G01240.1 | Thale cress | extracellular, vacuole | 52.94 | 53.73 |
| CDY37356 | Canola | plasma membrane | 63.97 | 46.03 |
| CDY37357 | Canola | cytosol, plasma membrane, vacuole | 63.24 | 44.79 |
| CDY40394 | Canola | cytosol, plasma membrane, vacuole | 63.24 | 44.79 |
| CDY06028 | Canola | plastid | 9.56 | 5.18 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HPB4 | UniProt:A0A078HPB4 | EnsemblPlants:CDY40395 | ProteinID:CDY40395 | ProteinID:CDY40395.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00069595001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEB366 |
Description
BnaA02g27090DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPB4]
Coordinates
chrLK032469:-:217487..218239
Molecular Weight (calculated)
16084.2 Da
IEP (calculated)
4.365
GRAVY (calculated)
0.692
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLFIWVKF GEPLFIWRAP TPEEIKQKDS PVRTLFSEIE GLLLMLYEIV YEIAYEEDMK TLLWAILFVA IIYTLGSYIS LLTVIYICLV CLMTIPVLYL
101: LFQEVVDNFI EDVLEVKDKI LEIFKPSRRS YGRVLY
101: LFQEVVDNFI EDVLEVKDKI LEIFKPSRRS YGRVLY
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.