Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014335.1-P | Field mustard | cytosol | 57.46 | 64.17 |
| CDY37353 | Canola | extracellular, plasma membrane, vacuole | 55.22 | 54.41 |
| CDY40396 | Canola | plasma membrane | 50.0 | 54.03 |
| CDY40395 | Canola | extracellular | 53.73 | 52.94 |
| CDY37357 | Canola | cytosol, plasma membrane, vacuole | 65.67 | 45.83 |
| CDY40394 | Canola | cytosol, plasma membrane, vacuole | 64.93 | 45.31 |
| CDY37356 | Canola | plasma membrane | 55.97 | 39.68 |
| Bra014336.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 37.31 | 18.05 |
| CDY06028 | Canola | plastid | 10.45 | 5.58 |
Protein Annotations
| MapMan:35.1 | ArrayExpress:AT2G01240 | EnsemblPlantsGene:AT2G01240 | RefSeq:AT2G01240 | TAIR:AT2G01240 | RefSeq:AT2G01240-TAIR-G |
| EnsemblPlants:AT2G01240.1 | TAIR:AT2G01240.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | PFAM:PF02453 |
| PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0008487D3F | : | : | : | : | : |
Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
Coordinates
chr2:-:128291..129132
Molecular Weight (calculated)
15510.4 Da
IEP (calculated)
7.247
GRAVY (calculated)
0.364
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.