Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 3
- plastid 1
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37357 | Canola | cytosol, plasma membrane, vacuole | 100.0 | 62.5 |
| CDY40394 | Canola | cytosol, plasma membrane, vacuole | 100.0 | 62.5 |
| AT2G01240.1 | Thale cress | extracellular, vacuole | 64.17 | 57.46 |
| Bra014336.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 47.5 | 20.58 |
Protein Annotations
| EnsemblPlants:Bra014335.1 | EnsemblPlants:Bra014335.1-P | EnsemblPlantsGene:Bra014335 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 |
| TMHMM:TMhelix | UniParc:UPI0002545BD3 | UniProt:M4DCW8 | MapMan:35.1 | : | : |
Description
AT2G01240 (E=3e-037) | reticulon family protein (RTNLB15)
Coordinates
chrA08:-:1545284..1546338
Molecular Weight (calculated)
13547.8 Da
IEP (calculated)
4.294
GRAVY (calculated)
0.495
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVNQIVGE GAEDSPVRAL FSKIESLLLM LYEIAYGEDI KTFLSAILYV AIVDTVGSYI NLLTILYICL VCAMTIPVLY LQFQEVIDNF IREVSEEKNK
101: LLEVLKSNVL NKIPRATKEE
101: LLEVLKSNVL NKIPRATKEE
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.