Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06028 | Canola | plastid | 68.23 | 75.3 |
| Bra014335.1-P | Field mustard | cytosol | 20.58 | 47.5 |
| AT2G01240.1 | Thale cress | extracellular, vacuole | 18.05 | 37.31 |
Protein Annotations
| MapMan:35.1 | EnsemblPlantsGene:Bra014336 | EnsemblPlants:Bra014336.1 | EnsemblPlants:Bra014336.1-P | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | UniProt:M4DCW9 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0002545BD2 | SEG:seg | : | : |
Description
AT2G01240 (E=4e-022) | reticulon family protein (RTNLB15)
Coordinates
chrA08:+:1531177..1534658
Molecular Weight (calculated)
32165.8 Da
IEP (calculated)
7.305
GRAVY (calculated)
-0.022
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYEIAYGED IKTFIWAILY VAIIYTIGSY INLLTIFYIC LVCLLTIPVL YLQYQEVVDN FIGENHGESA VLTDGESKAG RWACRSKRER ERMSQRIHKL
101: TKELSVEIQV SFFEEANNAH YNSVSIGYVD EVTSVFIGSC IFLMGQQPQP QTTYNLSNAS ICAFVLTVCV SFNKAFYRIL INGNTLSISK FCFWMVRRYK
201: NRDNWQYQPV DQARPEDWSV QFEVRERQIE RYITLNIVCS WVTNGLSLKL KDDLLKLKNP SLESVKTENI LAKSLYH
101: TKELSVEIQV SFFEEANNAH YNSVSIGYVD EVTSVFIGSC IFLMGQQPQP QTTYNLSNAS ICAFVLTVCV SFNKAFYRIL INGNTLSISK FCFWMVRRYK
201: NRDNWQYQPV DQARPEDWSV QFEVRERQIE RYITLNIVCS WVTNGLSLKL KDDLLKLKNP SLESVKTENI LAKSLYH
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.