Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40395 | Canola | extracellular | 88.97 | 88.97 |
| CDY40396 | Canola | plasma membrane | 56.62 | 62.1 |
| AT2G01240.1 | Thale cress | extracellular, vacuole | 54.41 | 55.22 |
| CDY37356 | Canola | plasma membrane | 65.44 | 47.09 |
| CDY37357 | Canola | cytosol, plasma membrane, vacuole | 63.97 | 45.31 |
| CDY40394 | Canola | cytosol, plasma membrane, vacuole | 63.97 | 45.31 |
| CDY06028 | Canola | plastid | 8.82 | 4.78 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HKG2 | UniProt:A0A078HKG2 | EnsemblPlants:CDY37353 | ProteinID:CDY37353 | ProteinID:CDY37353.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00063900001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EF4052 | : |
Description
BnaC02g33710DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKG2]
Coordinates
chrLK032398:-:186108..186851
Molecular Weight (calculated)
15884.9 Da
IEP (calculated)
4.581
GRAVY (calculated)
0.618
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLFIWVKF GEPLFIWRAP TPEEFKQKDS PVRALFSEIE GLLLMLYEIA YEEDMKTLLW AILFVAIIYT LGSYISLLTI IYICLVCLMT IPVLYLLCQE
101: VVDNFIEDVS EVKNKIHEIF KPSRRSCARS CECAVY
101: VVDNFIEDVS EVKNKIHEIF KPSRRSCARS CECAVY
001: MLILFLWAKF GEVFFTRRPP TPEELNQPDS PLKALFSMME GHLLMLYEIA YGKDNKTFLK TILYVAIIYN IGSYISLLTI LYICLVCSMT IPVVYMQFQE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
101: LIDSFMGKVS EEKNNLLEVF KQVVSKIPRA PKVE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT2G01240]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.