CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24707	Soybean	mitochondrion	52.38	20.95
CDY35562	Canola	plastid	61.11	16.85
Bra014273.1-P	Field mustard	plastid	63.49	16.46
GSMUA_Achr1P22830_001	Banana	mitochondrion	52.38	16.34
CDY65470	Canola	plastid	63.49	16.33
CDY03630	Canola	plastid	62.7	16.06
AT1G51310.1	Thale cress	plastid	61.9	15.69
CDY29626	Canola	plastid	63.49	15.62
PGSC0003DMT400009817	Potato	plastid	52.38	13.66
KRH29712	Soybean	mitochondrion	53.97	13.55
Os03t0174600-01	Rice	mitochondrion	52.38	13.52
Solyc09g074100.2.1	Tomato	plastid	51.59	13.43
TraesCS4D01G289400.1	Wheat	mitochondrion	51.59	13.4
TraesCS4B01G290300.1	Wheat	mitochondrion	51.59	13.4
TraesCS4A01G013400.2	Wheat	mitochondrion	51.59	13.27
Zm00001d027872_P001	Maize	mitochondrion	50.79	13.09
EER95411	Sorghum	mitochondrion	50.0	12.88
HORVU4Hr1G075740.9	Barley	mitochondrion	50.0	12.86
VIT_06s0004g02080.t01	Wine grape	plastid	53.97	12.59
CDY03633	Canola	cytosol	5.56	3.91
CDY35563	Canola	plasma membrane	11.11	3.72
CDY29625	Canola	endoplasmic reticulum, plasma membrane	11.11	3.72
KRH38623	Soybean	extracellular	2.38	2.78

Protein Annotations

EnsemblPlants:CDY03632	EnsemblPlantsGene:GSBRNA2T00116401001	Gene3D:3.40.50.620	GO:A0A078ERG7	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold
PANTHER:PTHR43052	PFAM:PF03054	ProteinID:CDY03632	ProteinID:CDY03632.1	UniParc:UPI0004EF1A86	MapMan:16.12.3.1.1.1

Description

BnaC03g68910D

Coordinates

chrLK031944:+:1111213..1113427

Molecular Weight (calculated)

14252.5 Da

IEP (calculated)

10.264

GRAVY (calculated)

-0.121

Length

126 amino acids

Sequence
(BLAST)

001: MDAISDMEYD YIASGQYAKV VHPPPGQSVL KLSQDMIRPT SSHVSQTQLK RLLFPLGCVK KVFEDVRKLA TQFDLSLTPP NKDIKHSQRT CFLGKIKFSN
101: FVGRHITLLR LTSNVRLCLI SHISPL

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.