Factsheet for Bra014273.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65470	Canola	plastid	98.97	98.16
AT1G51310.1	Thale cress	plastid	87.45	85.51
Bra030447.1-P	Field mustard	plastid	82.51	84.24
GSMUA_Achr1P22830_001	Banana	mitochondrion	59.26	71.29
KRH24707	Soybean	mitochondrion	43.62	67.3
PGSC0003DMT400009817	Potato	plastid	66.05	66.46
Solyc09g074100.2.1	Tomato	plastid	65.64	65.91
KRH29712	Soybean	mitochondrion	67.9	65.74
CDY03632	Canola	cytosol	16.46	63.49
VIT_06s0004g02080.t01	Wine grape	plastid	68.52	61.67
TraesCS4B01G290300.1	Wheat	mitochondrion	60.91	61.03
TraesCS4D01G289400.1	Wheat	mitochondrion	60.7	60.82
Os03t0174600-01	Rice	mitochondrion	60.91	60.66
HORVU4Hr1G075740.9	Barley	mitochondrion	60.91	60.41
TraesCS4A01G013400.2	Wheat	mitochondrion	60.7	60.2
EER95411	Sorghum	mitochondrion	60.29	59.92
Zm00001d027872_P001	Maize	mitochondrion	59.88	59.51
KRH38623	Soybean	extracellular	12.35	55.56
Bra030448.1-P	Field mustard	endoplasmic reticulum, plasma membrane	10.08	13.03

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	InterPro:Adenine_a_hdrlase_dom	EnsemblPlantsGene:Bra014273
EnsemblPlants:Bra014273.1	EnsemblPlants:Bra014273.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016783	InterPro:IPR014729
InterPro:IPR023382	UniProt:M4DCQ6	HAMAP:MF_00144	PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI0002545FA1	SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:

Description

AT1G51310 (E=7e-240) | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Coordinates

chrA08:-:2055509..2057709

Molecular Weight (calculated)

54541.2 Da

IEP (calculated)

7.202

GRAVY (calculated)

-0.235

Length

486 amino acids

Sequence
(BLAST)

001: MFSTVMKPLL SPSPSLFRLP PLSSSLSVLF HVFPFSSSSS PFHSPHPITP LRSSRRNHAS LSDHYLSCSV PEKPLRVAVL LSGGVDSSVA LRLLHAAGHS
101: CTAFYLKIWF QEGFENFWNQ CPWEDDLKYA KHVCEQVGVP LEVVHLTDEY WERVVSYIIE EYKCGRTPNP DVLCNTRIKF GAFMDAISDM EYDYVASGHY
201: AKVAHPPAGP SVLQLSQDMV KDQTYFLSHL SQTQLKRLLF PLGCVKKDEV RKLATQFDLP NKDRKDSQGI CFLGKIKFSD FVGRHIGEKE GIILEAETGD
301: FLGKHRGFWF YTIGQRQGLR LPGGPWYVVE KDTKNNVVFV SRDYYSIDKR RRVFRVGSLR WLSGKPSGNV SQLRCKVRHG PGFYSCSFEM EAEGDVAVVH
401: LDEDDQGLAA GQFAAFYEGT ACIGSGVILE SWDDQCFPVC EKALQLAAVE DKTKLGKPVK IMTMPVTTSV EAEPGETSRE EKLLNA

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.