Factsheet for GSMUA_Achr1P22830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G290300.1	Wheat	mitochondrion	77.97	64.95
TraesCS4D01G289400.1	Wheat	mitochondrion	77.48	64.54
Os03t0174600-01	Rice	mitochondrion	77.72	64.34
EER95411	Sorghum	mitochondrion	77.72	64.21
TraesCS4A01G013400.2	Wheat	mitochondrion	77.72	64.08
HORVU4Hr1G075740.9	Barley	mitochondrion	77.48	63.88
Zm00001d027872_P001	Maize	mitochondrion	77.23	63.8
PGSC0003DMT400009817	Potato	plastid	75.25	62.94
Solyc09g074100.2.1	Tomato	plastid	74.26	61.98
KRH24707	Soybean	mitochondrion	48.02	61.59
KRH29712	Soybean	mitochondrion	76.24	61.35
Bra030447.1-P	Field mustard	plastid	71.78	60.92
Bra014273.1-P	Field mustard	plastid	71.29	59.26
CDY65470	Canola	plastid	71.53	58.98
AT1G51310.1	Thale cress	plastid	72.28	58.75
VIT_06s0004g02080.t01	Wine grape	plastid	78.22	58.52
CDY03630	Canola	plastid	71.04	58.33
CDY29626	Canola	plastid	71.29	56.25
KRH38623	Soybean	extracellular	14.85	55.56
CDY35562	Canola	plastid	61.14	54.05
CDY03632	Canola	cytosol	16.34	52.38
CDY03633	Canola	cytosol	22.52	50.84

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	InterPro:Adenine_a_hdrlase_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016783	EnsemblPlantsGene:GSMUA_Achr1G22830_001	EnsemblPlants:GSMUA_Achr1P22830_001	EnsemblPlants:GSMUA_Achr1T22830_001	InterPro:IPR014729
InterPro:IPR023382	UniProt:M0S291	HAMAP:MF_00144	PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI000295C68D	SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:

Description

Putative tRNA-specific 2-thiouridylase mnmA [Source:GMGC_GENE;Acc:GSMUA_Achr1G22830_001]

Coordinates

chr1:+:17180976..17185857

Molecular Weight (calculated)

45712.4 Da

IEP (calculated)

6.342

GRAVY (calculated)

-0.260

Length

404 amino acids

Sequence
(BLAST)

001: MPGRRLRVAV LLSGGVDSST ALRLLHAAGH DCTAFYLKIW FQEDFQNFWS ECPWDEDLKY ARAVCDQVDV PLEVVHLSDE YWNNVVCHII SEYRSGRTPN
101: PDVLCNTRIK FGAFLEAIAS MEFDYVASGH YAHVVHSSSE DGPSILKLSK DLIKDQTYFL SHLSQSQLKR LLFPLGCLRK DEVRRIATLM DLPNKDRKDS
201: QGICFLGKVK FSEFVAKHIG ELEGILLEAE TGDYLGNHHG FWFYTIGQRQ GLRLSGGPWY VVEKDVRNNV VFVSRNYFSL DKRRRTFHVG SLNWFSGAPP
301: ENTEQLQCKV RHGPGFYDCS IMAVPGIDGD EDNLVVHLSE DDQGLAAGQF AAFYHGDVCI GSGVIMDSWD EKCFPICSKA LEIARMEDKS KLGKPIRIMN
401: PDTR

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.