CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29626	Canola	plastid	82.71	73.83
CDY65470	Canola	plastid	74.62	69.59
CDY03630	Canola	plastid	74.4	69.11
GSMUA_Achr1P22830_001	Banana	mitochondrion	54.05	61.14
CDY03632	Canola	cytosol	16.85	61.11
KRH24707	Soybean	mitochondrion	41.36	60.0
Solyc09g074100.2.1	Tomato	plastid	59.74	56.41
PGSC0003DMT400009817	Potato	plastid	59.52	56.31
KRH29712	Soybean	mitochondrion	61.27	55.78
VIT_06s0004g02080.t01	Wine grape	plastid	63.24	53.52
TraesCS4D01G289400.1	Wheat	mitochondrion	55.14	51.96
Os03t0174600-01	Rice	mitochondrion	55.36	51.84
TraesCS4B01G290300.1	Wheat	mitochondrion	54.92	51.75
TraesCS4A01G013400.2	Wheat	mitochondrion	54.27	50.61
EER95411	Sorghum	mitochondrion	54.05	50.51
Zm00001d027872_P001	Maize	mitochondrion	53.61	50.1
HORVU4Hr1G075740.9	Barley	mitochondrion	53.39	49.8
CDY03633	Canola	cytosol	18.38	46.93
KRH38623	Soybean	extracellular	10.94	46.3
CDY35563	Canola	plasma membrane	9.85	11.97
CDY29625	Canola	endoplasmic reticulum, plasma membrane	9.85	11.97

Protein Annotations

EnsemblPlants:CDY35562	EnsemblPlantsGene:GSBRNA2T00058873001	Gene3D:2.40.30.10	GO:A0A078HCP8	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
InterPro:tRNA-specific_2-thiouridylase	PANTHER:PTHR43052	PFAM:PF03054	ProteinID:CDY35562	ProteinID:CDY35562.1	SEG:seg
SUPFAM:SSF52402	UniParc:UPI0004EE9F29	UniProt:A0A078HCP8	MapMan:16.12.3.1.1.1	:	:

Description

BnaC05g27190DBnaC05g27190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCP8]

Coordinates

chrLK032355:+:24013..27127

Molecular Weight (calculated)

50850.0 Da

IEP (calculated)

7.806

GRAVY (calculated)

-0.212

Length

457 amino acids

Sequence
(BLAST)

001: MLSAVVKPLP SLFRLPPLSS SSLSLYLRVS PLSSSYFHSQ SPLPRRSYSR HAFLGDHHLS CSMPNKPLRV AVLLSGGVDS SVALRLLHAA GHSSFENFWN
101: QCPWEDDLKY AKHVCEQVDV PLKVLHLTDE YWERVVSDII EEYRCGRTPN PDVLCNTRIK FGAFMDAISG MEYEYIASVH YAKVVHPPAD QTDSSSVLEL
201: SQDMVPASAL GKLGSPQGSM AVEPSPQCAL RLGAKGDRHF KHSMVKDQTY FLSHLCQTQL KRLLFPLGCV KKEEVRKLAT EFDLPNKDRK DSQGICFLGK
301: IKFSDFVGRH IGEMKGIILE AETGDFSDTK NNVVFVSRNY YSIDKRRRVF RVGSLRWLSG KPPGNVNQLR CKVRHGPGFY SCSFEMEGDV AVVHLDEDDQ
401: GLAAGQFAAF YEGTTCIGSG VILESWDGQC FPVCAKALEL AAMEDKTKLG KPVTTIC

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.