CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027872_P001	Maize	mitochondrion	91.82	91.82
Os03t0174600-01	Rice	mitochondrion	82.21	82.38
TraesCS4D01G289400.1	Wheat	mitochondrion	81.19	81.86
TraesCS4B01G290300.1	Wheat	mitochondrion	80.98	81.65
TraesCS4A01G013400.2	Wheat	mitochondrion	81.39	81.22
HORVU4Hr1G075740.9	Barley	mitochondrion	78.12	77.96
GSMUA_Achr1P22830_001	Banana	mitochondrion	64.21	77.72
KRH24707	Soybean	mitochondrion	42.33	65.71
Solyc09g074100.2.1	Tomato	plastid	63.19	63.84
PGSC0003DMT400009817	Potato	plastid	62.37	63.15
Bra030447.1-P	Field mustard	plastid	60.12	61.76
KRH29712	Soybean	mitochondrion	62.99	61.35
Bra014273.1-P	Field mustard	plastid	59.92	60.29
CDY65470	Canola	plastid	60.33	60.2
AT1G51310.1	Thale cress	plastid	59.71	58.75
CDY03630	Canola	plastid	58.9	58.54
VIT_06s0004g02080.t01	Wine grape	plastid	63.8	57.78
CDY29626	Canola	plastid	59.92	57.23
CDY35562	Canola	plastid	50.51	54.05
KRH38623	Soybean	extracellular	11.86	53.7
CDY03633	Canola	cytosol	18.4	50.28
CDY03632	Canola	cytosol	12.88	50.0

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	EntrezGene:8059800	InterPro:Adenine_a_hdrlase_dom
UniProt:C5WVW0	EnsemblPlants:EER95411	ProteinID:EER95411	ProteinID:EER95411.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016783	InterPro:IPR014729	InterPro:IPR023382	HAMAP:MF_00144	ProteinID:OQU93141.1	PFAM:PF03054
PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	EnsemblPlantsGene:SORBI_3001G486500	SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI0001A82EF7
RefSeq:XP_002468413.1	SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:75698271..75706848

Molecular Weight (calculated)

55141.9 Da

IEP (calculated)

7.277

GRAVY (calculated)

-0.283

Length

489 amino acids

Sequence
(BLAST)

001: MLRVVVSTLP TLRPLLRRGP LLNHKPLLRS RLQPWPFRAL SSPAAAAAAS APSASVKGED VALEEHLTRC AAAGRAPLRV AVLVSGGVDS SVALRLLHAA
101: GHHCTAFYLK IWFQEDFRNF WSECPWDEDL KYAQAVCDKI DVPLEVVHLS DEYWNYVVSH MINEYRCGRT PNPDVLCNTR IKFGAFLEAI ENLGFDYIAS
201: GHYAHVVHPS TENTEAPSIL QLSKDKVKDQ TYFLSHLSQP QLRRLLFPLG CITKDEVRRL ATQMGLPNQG RKDSQGICFL GKVKFSEFVE RHIGEMEGII
301: LEAESGDYLG KHRGFWFYTI GQRQGLRLPG GPWYVVEKDV QNNVVFVSRN YYSLDKRRRT FRVGSLNWFD SSGPGNNEQL KCKVRHSPEF HDCTLIKEHT
401: EENEDALVVH LSEDDQGLAA GQFAAFYSEH SCLGSGIILD SWDKMSFPVC SRALEIAKLE DKSSLGKPVR ILNLEHVVKP EKQEEIKVA

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.