CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65470	Canola	plastid	68.16	24.9
CDY03630	Canola	plastid	68.16	24.8
GSMUA_Achr1P22830_001	Banana	mitochondrion	50.84	22.52
CDY29626	Canola	plastid	61.45	21.48
KRH29712	Soybean	mitochondrion	55.87	19.92
Solyc09g074100.2.1	Tomato	plastid	51.96	19.21
PGSC0003DMT400009817	Potato	plastid	51.4	19.05
TraesCS4B01G290300.1	Wheat	mitochondrion	50.84	18.76
VIT_06s0004g02080.t01	Wine grape	plastid	56.42	18.7
Zm00001d027872_P001	Maize	mitochondrion	50.84	18.61
HORVU4Hr1G075740.9	Barley	mitochondrion	50.84	18.57
TraesCS4D01G289400.1	Wheat	mitochondrion	50.28	18.56
EER95411	Sorghum	mitochondrion	50.28	18.4
CDY35562	Canola	plastid	46.93	18.38
TraesCS4A01G013400.2	Wheat	mitochondrion	50.28	18.37
Os03t0174600-01	Rice	mitochondrion	49.16	18.03
KRH24707	Soybean	mitochondrion	19.55	11.11
KRH38623	Soybean	extracellular	4.47	7.41
CDY03632	Canola	cytosol	3.91	5.56
CDY29625	Canola	endoplasmic reticulum, plasma membrane	8.94	4.26
CDY35563	Canola	plasma membrane	7.82	3.72

Protein Annotations

EnsemblPlants:CDY03633	EnsemblPlantsGene:GSBRNA2T00116402001	Gene3D:2.30.30.280	GO:A0A078EVN3	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016783	InterPro:Adenine_a_hdrlase_dom	InterPro:IPR023382	PANTHER:PTHR43052	PFAM:PF03054
ProteinID:CDY03633	ProteinID:CDY03633.1	SEG:seg	UniParc:UPI0004EE028A	MapMan:35.2	:

Description

BnaC03g68920D

Coordinates

chrLK031944:+:1113500..1114506

Molecular Weight (calculated)

20477.9 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.403

Length

179 amino acids

Sequence
(BLAST)

001: MFFPQRHRFH DLLTSLCQTS LSTLKGPHSY VNDITTSNFQ CGTLFDISHI GDKEGIILEA ETGDFLGNHR GFWFYTSGHR QGLRLLGGPW YVVEKDTKNN
101: VVFVSRNYYS IDKRWKVRHR PGFFSCSFEM EADVAVVHLD EDDQGVILES WDDQCFPVFT TSVEAEPGET SGEEKLVNT

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.