Factsheet for HORVU4Hr1G075740.9

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G290300.1	Wheat	mitochondrion	88.57	89.48
TraesCS4A01G013400.2	Wheat	mitochondrion	88.16	88.16
TraesCS4D01G289400.1	Wheat	mitochondrion	84.49	85.36
EER95411	Sorghum	mitochondrion	77.96	78.12
Os03t0174600-01	Rice	mitochondrion	77.76	78.07
GSMUA_Achr1P22830_001	Banana	mitochondrion	63.88	77.48
Zm00001d027872_P001	Maize	mitochondrion	76.73	76.89
KRH24707	Soybean	mitochondrion	41.43	64.44
PGSC0003DMT400009817	Potato	plastid	61.63	62.53
Solyc09g074100.2.1	Tomato	plastid	60.82	61.57
Bra030447.1-P	Field mustard	plastid	59.59	61.34
KRH29712	Soybean	mitochondrion	62.65	61.16
Bra014273.1-P	Field mustard	plastid	60.41	60.91
CDY65470	Canola	plastid	60.41	60.41
AT1G51310.1	Thale cress	plastid	60.2	59.36
CDY03630	Canola	plastid	59.18	58.94
VIT_06s0004g02080.t01	Wine grape	plastid	64.08	58.15
CDY29626	Canola	plastid	58.98	56.45
KRH38623	Soybean	extracellular	12.04	54.63
CDY35562	Canola	plastid	49.8	53.39
CDY03633	Canola	cytosol	18.57	50.84
CDY03632	Canola	cytosol	12.86	50.0

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	UniProt:A0A287PQ48	InterPro:Adenine_a_hdrlase_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016783	EnsemblPlantsGene:HORVU4Hr1G075740	EnsemblPlants:HORVU4Hr1G075740.9	InterPro:IPR014729
InterPro:IPR023382	HAMAP:MF_00144	PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402
TIGRFAMs:TIGR00420	UniParc:UPI000B46EF6E	SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:	:

Description

No Description!

Coordinates

chrchr4H:-:599193052..599196006

Molecular Weight (calculated)

55084.7 Da

IEP (calculated)

7.192

GRAVY (calculated)

-0.280

Length

490 amino acids

Sequence
(BLAST)

001: PPPPMLRVVS TLRPLLRSPL FTGPKPLSRP RRPPRLFRAL SSSAPLAASA PAPGAVEIRE EHLVRCAEAE RAPLRVAVLL SGGVDSSVAL RLLHAAGHSC
101: TAFYLKIWFQ EDFRNFWSEC PWDDDLKYAQ AVCDKIDVPL EVVHLSDEYW NHVVSHMISE YRNGRTPNPD VLCNTRIKFG AFLEAIENLG FDYIASGHYA
201: HVVHPPVENA EGPSVLQLSK DEVKDQTYFL SHLSQSQLRR LLFPLGCITK DEVRSLAVQM NLPNQARKDS QGICFLGKVK FSEFVQAHIG EIEGILLEAE
301: TGDYLGTHRG FWFYTIGQRQ GLRLSGGPWY VVEKDVQNNV VFVSRNYYSL DKRRRTFRVG SLNWFSDSGP ADNERLKCKV RHSPDFHNCT VTREQTEELV
401: VNSNNGDVLA VRLSEDDQGL AAGQFAAFYR DSACLGSGII LDSWDEMSFP VCAKALETAR LEDKSKLGKP VRIMNLEHLV KPEREPAKVI

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.