Factsheet for Bra030447.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29626	Canola	plastid	95.8	89.06
Bra014273.1-P	Field mustard	plastid	84.24	82.51
GSMUA_Achr1P22830_001	Banana	mitochondrion	60.92	71.78
KRH24707	Soybean	mitochondrion	44.54	67.3
Solyc09g074100.2.1	Tomato	plastid	67.86	66.74
PGSC0003DMT400009817	Potato	plastid	67.44	66.46
KRH29712	Soybean	mitochondrion	69.33	65.74
VIT_06s0004g02080.t01	Wine grape	plastid	71.01	62.59
Os03t0174600-01	Rice	mitochondrion	62.4	60.86
TraesCS4D01G289400.1	Wheat	mitochondrion	61.76	60.62
TraesCS4B01G290300.1	Wheat	mitochondrion	61.55	60.41
EER95411	Sorghum	mitochondrion	61.76	60.12
Zm00001d027872_P001	Maize	mitochondrion	61.55	59.92
TraesCS4A01G013400.2	Wheat	mitochondrion	61.55	59.8
HORVU4Hr1G075740.9	Barley	mitochondrion	61.34	59.59
KRH38623	Soybean	extracellular	12.82	56.48
Bra030448.1-P	Field mustard	endoplasmic reticulum, plasma membrane	10.92	13.83

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	InterPro:Adenine_a_hdrlase_dom	EnsemblPlantsGene:Bra030447
EnsemblPlants:Bra030447.1	EnsemblPlants:Bra030447.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016783	InterPro:IPR014729
InterPro:IPR023382	UniProt:M4ENS7	HAMAP:MF_00144	PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI0002547AD0	SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:

Description

AT1G51310 (E=1e-227) | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Coordinates

chrA05:+:11374134..11376262

Molecular Weight (calculated)

53862.6 Da

IEP (calculated)

7.676

GRAVY (calculated)

-0.224

Length

476 amino acids

Sequence
(BLAST)

001: MRQNYRIDQT PMLSAVVKPL PSLFRLPPLS SSSLSLYFRV SPSPRLLFSR RSYSRHAFLG DHHLSCSMPN KPLRVAVLLS GGVDSSVALR LLHAAGHSCT
101: AFYLKIWFQE GFENFWNQCP WEDDLKYAKH VCEQVDVPLE VVHLTDEYWE RVVSYIIEEY RCGRTPNPDV LCNTRIKFGA FMDAISGMEY DYIASGHYAK
201: VVHPPADQTD SSSVLELSQD MVKDQTYFLS HLSQTQLKRL LFPLGCVKKE EVRKLATEFD LPNKDRKDSQ GICFLGKIKF SDFVGRHIGE MEGIILEAET
301: GVFLGNHRGF WFYTIGQRQG LRLPGGPWYV VEKDTKNNVV FVSRNYYSMD KRRRVFRVGS LRWLSGKPSG NVNQLRCKVR HGPGFYSCSF EMEGDVAVVH
401: LDEDDQGLAA GQFAAFYEGT TCIGSGVILE SWDDQCFPVC AKALELAALE DKTKLGKPVK IKTMPVTTSA EAELVV

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.