CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
vacuole 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38623	Soybean	extracellular	20.95	61.11
KRH29712	Soybean	mitochondrion	89.21	55.98
CDY03632	Canola	cytosol	20.95	52.38
GSMUA_Achr1P22830_001	Banana	mitochondrion	61.59	48.02
PGSC0003DMT400009817	Potato	plastid	68.57	44.72
Bra030447.1-P	Field mustard	plastid	67.3	44.54
Solyc09g074100.2.1	Tomato	plastid	67.94	44.21
Bra014273.1-P	Field mustard	plastid	67.3	43.62
CDY65470	Canola	plastid	67.3	43.27
AT1G51310.1	Thale cress	plastid	68.25	43.26
Os03t0174600-01	Rice	mitochondrion	66.67	43.03
Zm00001d027872_P001	Maize	mitochondrion	66.03	42.54
CDY03630	Canola	plastid	66.35	42.48
EER95411	Sorghum	mitochondrion	65.71	42.33
TraesCS4B01G290300.1	Wheat	mitochondrion	64.76	42.06
TraesCS4D01G289400.1	Wheat	mitochondrion	64.76	42.06
TraesCS4A01G013400.2	Wheat	mitochondrion	65.08	41.84
HORVU4Hr1G075740.9	Barley	mitochondrion	64.44	41.43
CDY29626	Canola	plastid	67.3	41.41
CDY35562	Canola	plastid	60.0	41.36
VIT_06s0004g02080.t01	Wine grape	plastid	69.52	40.56
CDY03633	Canola	cytosol	11.11	19.55

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:3.40.50.620	EMBL:ACUP02007184	EnsemblPlantsGene:GLYMA_12G057700	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
InterPro:IPR014729	UniProt:K7LT92	EnsemblPlants:KRH24707	ProteinID:KRH24707	ProteinID:KRH24707.1	PFAM:PF03054
PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI00029507F4	SEG:seg
InterPro:tRNA-specific_2-thiouridylase	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:4193453..4196106

Molecular Weight (calculated)

36067.1 Da

IEP (calculated)

6.587

GRAVY (calculated)

-0.217

Length

315 amino acids

Sequence
(BLAST)

001: MWKVAVPWNW IWRPMASPPL TAFTCQNLHT LNPRPRCRSF KLFCRPSFSA VAQPSPPLSG DLDRYLRCSM PQNSPLRVAV LVSGGVDSSV ALRLLHAAGH
101: SCTAFYLKIW FQEDFENFWS ECPWEEDLKY AKDVCNQVDV PLEVVHLTDE YWNNVVSYLI EEYSSGRTPN PDVLCNTRIK FGAFLDAIGG MGFDYVASGH
201: YANVIHPCAD WMDEPSVLEL SQDMVKDQTY FLSHLSQSQL RRLLFPLGCI PKDEVRKLAT KFDLPNKDRK DSQGICFLGK IRFSEFVTRH IGEREGIILE
301: AETGDFLGKH RGFWF

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.