Factsheet for PGSC0003DMT400009817

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074100.2.1	Tomato	plastid	90.89	90.7
GSMUA_Achr1P22830_001	Banana	mitochondrion	62.94	75.25
KRH24707	Soybean	mitochondrion	44.72	68.57
KRH29712	Soybean	mitochondrion	70.81	68.13
Bra030447.1-P	Field mustard	plastid	66.46	67.44
Bra014273.1-P	Field mustard	plastid	66.46	66.05
CDY65470	Canola	plastid	66.87	65.92
AT1G51310.1	Thale cress	plastid	67.29	65.39
VIT_06s0004g02080.t01	Wine grape	plastid	73.08	65.37
CDY03630	Canola	plastid	66.25	65.04
Os03t0174600-01	Rice	mitochondrion	63.98	63.32
TraesCS4B01G290300.1	Wheat	mitochondrion	63.56	63.3
TraesCS4A01G013400.2	Wheat	mitochondrion	63.35	62.45
EER95411	Sorghum	mitochondrion	63.15	62.37
TraesCS4D01G289400.1	Wheat	mitochondrion	62.53	62.27
CDY29626	Canola	plastid	65.63	61.91
HORVU4Hr1G075740.9	Barley	mitochondrion	62.53	61.63
Zm00001d027872_P001	Maize	mitochondrion	61.28	60.53
CDY35562	Canola	plastid	56.31	59.52
KRH38623	Soybean	extracellular	13.25	59.26
CDY03632	Canola	cytosol	13.66	52.38
CDY03633	Canola	cytosol	19.05	51.4

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	InterPro:Adenine_a_hdrlase_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016783	InterPro:IPR014729	InterPro:IPR023382	UniProt:M0ZWZ3	HAMAP:MF_00144
PFAM:PF03054	EnsemblPlantsGene:PGSC0003DMG400003844	PGSC:PGSC0003DMG400003844	EnsemblPlants:PGSC0003DMT400009817	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI0002949DBD	InterPro:tRNA-specific_2-thiouridylase	:	:

Description

TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400003844]

Coordinates

chr9:-:51199222..51208347

Molecular Weight (calculated)

54789.0 Da

IEP (calculated)

8.153

GRAVY (calculated)

-0.197

Length

483 amino acids

Sequence
(BLAST)

001: MSTISLPFQY THSLKHLFSL YPFQKPLIQV FSQPRKITTI ARRLFSLKPL AVSSPIRNYG DEKINPTYLS CSMPHKNPLK VAVLVSGGVD SSVALRLLHA
101: AGHSCTAFYL KIWFQEDFEN YWSECPWEDD LKYAKAVCDQ VDVPLEVVHL TDEYWNNVVS YIIEEYKCGR TPNPDVLCNT RIKFGAFMDA ISGMEFDFVA
201: SGHYAKIVHA STAQLDEPSI LKLSKDMVKD QTYFLSHLSQ AQLKRLIFPL GCIQKDEVRT LAKSFNLPNQ DRKDSQGICF LGKIKFSEFV ARHIGESEGI
301: ILEAENGDYL GNHRGFWFYT IGQRQGLRLP GGPWYVVEKD IKNNVVYVSR NYFSVDKKRR LFRVGSLKWL SGLFPKQINE LQCKVRHGPS FYDCSLVMEV
401: DQHGQEVAVV RLSGDDQGLA AGQFAAFYNG RTCIGSGIIL ESWDDQGYPI CEKALEIARM EDKSKLGKPV KIMVKPELSV ATI

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.