CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030447.1-P	Field mustard	plastid	89.06	95.8
CDY35562	Canola	plastid	73.83	82.71
CDY65470	Canola	plastid	78.12	81.63
CDY03630	Canola	plastid	77.54	80.69
GSMUA_Achr1P22830_001	Banana	mitochondrion	56.25	71.29
KRH24707	Soybean	mitochondrion	41.41	67.3
Solyc09g074100.2.1	Tomato	plastid	62.5	66.12
PGSC0003DMT400009817	Potato	plastid	61.91	65.63
KRH29712	Soybean	mitochondrion	64.06	65.34
CDY03632	Canola	cytosol	15.62	63.49
VIT_06s0004g02080.t01	Wine grape	plastid	65.62	62.22
CDY03633	Canola	cytosol	21.48	61.45
Os03t0174600-01	Rice	mitochondrion	57.81	60.66
TraesCS4D01G289400.1	Wheat	mitochondrion	57.42	60.62
TraesCS4B01G290300.1	Wheat	mitochondrion	56.84	60.0
EER95411	Sorghum	mitochondrion	57.23	59.92
Zm00001d027872_P001	Maize	mitochondrion	56.84	59.51
HORVU4Hr1G075740.9	Barley	mitochondrion	56.45	58.98
TraesCS4A01G013400.2	Wheat	mitochondrion	56.45	58.98
KRH38623	Soybean	extracellular	11.52	54.63
CDY35563	Canola	plasma membrane	10.16	13.83
CDY29625	Canola	endoplasmic reticulum, plasma membrane	10.16	13.83

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	GO:A0A078GVU4	UniProt:A0A078GVU4	InterPro:Adenine_a_hdrlase_dom
EnsemblPlants:CDY29626	ProteinID:CDY29626	ProteinID:CDY29626.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016783
EnsemblPlantsGene:GSBRNA2T00043375001	InterPro:IPR023382	HAMAP:MF_00144	PFAM:PF03054	SUPFAM:SSF52402	UniParc:UPI0004EDAFD0
SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:	:	:	:

Description

BnaA05g15440DBnaA05g15440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVU4]

Coordinates

chrLK032240:-:474358..476750

Molecular Weight (calculated)

58091.9 Da

IEP (calculated)

7.996

GRAVY (calculated)

-0.179

Length

512 amino acids

Sequence
(BLAST)

001: MRQNYRIDQT PMLSAVVKPL PSLFRLPPLS SSSLSLYFRV SPSPQSPRLL FSRRSYSRHA FLGDHHLSCS MPNKPLRVAV LLSGGVDSSV ALRLLHAAGH
101: SFTPFYLKIW FQEGFENFWN QCPWEDDLKY AKHVCEQVDV PLEVVHLTDE YWERVVSYII EEYRCGRTPN PDVLCNTRIK FGAFMDAISG MEYDYIASGH
201: YAKVVHPPAD QTDSSSVLEL SQDMVPNHVL FFAVLERMSH VVFNVCILPT YASKRYIVKD QTYFLSHLSQ TQLKRLLFPL GCVKKEEVRK LATEFDLPNK
301: DRKDSQGICF LGKIKFSDFV GRHIGEMEGI ILEAETGDFL GNHRGFWFYT IGQRQGLRLP GGPWYVVEKD TKNNVVFVSR NYYSMDKRRR VFRVGSLRWL
401: SGKPSGNVNQ LRCKVRHGPG FYSCSFEMEG DVAVVHLDED AQGLAAGQFA AFYEGTTCIG SGVILESWDD QCFPVCAKAL ELAALEDKTK LGKPVKIKTM
501: PVTTSVEAEL VV

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.