CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24707	Soybean	mitochondrion	55.98	89.21
GSMUA_Achr1P22830_001	Banana	mitochondrion	61.35	76.24
PGSC0003DMT400009817	Potato	plastid	68.13	70.81
Solyc09g074100.2.1	Tomato	plastid	67.93	70.45
Bra030447.1-P	Field mustard	plastid	65.74	69.33
Bra014273.1-P	Field mustard	plastid	65.74	67.9
CDY65470	Canola	plastid	65.94	67.55
AT1G51310.1	Thale cress	plastid	66.14	66.8
CDY03630	Canola	plastid	64.74	66.06
VIT_06s0004g02080.t01	Wine grape	plastid	70.52	65.56
Os03t0174600-01	Rice	mitochondrion	63.35	65.16
TraesCS4B01G290300.1	Wheat	mitochondrion	62.35	64.54
CDY29626	Canola	plastid	65.34	64.06
TraesCS4A01G013400.2	Wheat	mitochondrion	61.95	63.47
TraesCS4D01G289400.1	Wheat	mitochondrion	60.96	63.09
EER95411	Sorghum	mitochondrion	61.35	62.99
KRH38623	Soybean	extracellular	13.55	62.96
HORVU4Hr1G075740.9	Barley	mitochondrion	61.16	62.65
Zm00001d027872_P001	Maize	mitochondrion	60.36	61.96
CDY35562	Canola	plastid	55.78	61.27
CDY03633	Canola	cytosol	19.92	55.87
CDY03632	Canola	cytosol	13.55	53.97

Protein Annotations

EntrezGene:100785275	MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	EMBL:ACUP02006817
InterPro:Adenine_a_hdrlase_dom	EnsemblPlantsGene:GLYMA_11G133500	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016783	UniProt:I1LJW0
InterPro:IPR014729	InterPro:IPR023382	EnsemblPlants:KRH29712	ProteinID:KRH29712	ProteinID:KRH29712.1	HAMAP:MF_00144
PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI00023CC49A
SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:10206048..10209768

Molecular Weight (calculated)

56853.8 Da

IEP (calculated)

7.851

GRAVY (calculated)

-0.330

Length

502 amino acids

Sequence
(BLAST)

001: MLRVALRWNS IWRPMASLPL TPFTCQNLHT LNPRPRCRTF KLFCRPSSSA VAHTSPPLSG DLDRYLRCSM PQNSPLRVAV LVSGGVDSSV ALRLLHAAGH
101: SCTAFYLKIW FQEDFENFWS ECPWEDDLKY AKDVCNQVDV PLEVVHLTDE YWNNVVSYLI EEYSSGRTPN PDVLCNTRIK FGAFLDAIGG MGFDYVASGH
201: YANVIHPCSD RRDEPSVLEL SQDMVKDQTY FLSHLSQSQL KQLLFPLGCI PKDEVRKLAT KFDLPNKDRK DSQGICFLGK IRFSEFVARH IGEREGVILE
301: AETGDFLGKH RGFWFYTIGQ RQGLRLPGGP WYVVEKDVKN NVVFVSRNYF SFDKRRRVFR VGSFKWLSGL PPGQTTQLQC KVRHGPGFYD CSLQMEVEAD
401: GQCHSAVVRI SEDDQGLAAG QFAAFYEGRT CIGSGVILEF WDDQSFPVCT KALEIARMED KSKIGNPVKI KVKPDNPQEV CDSAELASKT SQGNKKLKSC
501: WH

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.