CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65470	Canola	plastid	94.92	95.31
AT1G51310.1	Thale cress	plastid	85.98	85.11
CDY29626	Canola	plastid	80.69	77.54
CDY35562	Canola	plastid	69.11	74.4
GSMUA_Achr1P22830_001	Banana	mitochondrion	58.33	71.04
CDY03633	Canola	cytosol	24.8	68.16
KRH24707	Soybean	mitochondrion	42.48	66.35
PGSC0003DMT400009817	Potato	plastid	65.04	66.25
Solyc09g074100.2.1	Tomato	plastid	64.84	65.91
KRH29712	Soybean	mitochondrion	66.06	64.74
CDY03632	Canola	cytosol	16.06	62.7
VIT_06s0004g02080.t01	Wine grape	plastid	66.87	60.93
Os03t0174600-01	Rice	mitochondrion	59.55	60.04
TraesCS4B01G290300.1	Wheat	mitochondrion	59.15	60.0
TraesCS4D01G289400.1	Wheat	mitochondrion	58.94	59.79
TraesCS4A01G013400.2	Wheat	mitochondrion	59.15	59.39
HORVU4Hr1G075740.9	Barley	mitochondrion	58.94	59.18
EER95411	Sorghum	mitochondrion	58.54	58.9
Zm00001d027872_P001	Maize	mitochondrion	58.13	58.49
KRH38623	Soybean	extracellular	11.99	54.63
CDY29625	Canola	endoplasmic reticulum, plasma membrane	10.37	13.56
CDY35563	Canola	plasma membrane	10.16	13.3

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	GO:A0A078ENW7	InterPro:Adenine_a_hdrlase_dom
EnsemblPlants:CDY03630	ProteinID:CDY03630	ProteinID:CDY03630.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016783
EnsemblPlantsGene:GSBRNA2T00116399001	InterPro:IPR014729	InterPro:IPR023382	HAMAP:MF_00144	PFAM:PF03054	PANTHER:PTHR43052
InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI0004EEBAA0	SEG:seg	InterPro:tRNA-specific_2-thiouridylase

Description

BnaC03g68890D

Coordinates

chrLK031944:+:1099684..1102506

Molecular Weight (calculated)

55180.9 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.208

Length

492 amino acids

Sequence
(BLAST)

001: MFSTVMKPLL SPSPSLFRLP PLSSSLSLFF RVFPFSSSSS SHFHSPHPIT PLRSSRRNYT RHHASLSDHY LSCSVPEKPL RVAVLLSGGV DSSVALRLLH
101: AAGHSCTAFY LKIWFQEGFE NFWNQCPWED DLKYAKHVCE QVGVPLEVVH LTDEYWERVV SYIIEEYKCG RTPNPDVLCN TRIKFGAFMD AISDMEYDYV
201: ASGHYAKVAH PAAGGPSVLE LSQDMVKDQT YFLSHLSQTQ LKRLLFPLGC VKKEEVRKLA TQFDLPNKDR KDSQGICFLG KIKFSDFVGT HIGEKEGIIL
301: EAETGDFLGN HKGFWFYTIG QRQGLRLPGG PWYVVEKDTK NNVVFVSRDY YSIDKRRRVF RAGSLRWLSG KPLVNISQLR CKVRHGPGFY SCSFEMEAEG
401: DVAVVHLDED DQGLAAGQFA AFYEGTICIG SGVILESWDD QCFPVCAKAL QLAAVEDKTK LGKPVKIMTM PVTTSVEAEP GESSGEERLV NA

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.