Factsheet for Zm00001d027872_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95411	Sorghum	mitochondrion	91.82	91.82
Os03t0174600-01	Rice	mitochondrion	80.78	80.94
TraesCS4B01G290300.1	Wheat	mitochondrion	79.96	80.62
TraesCS4D01G289400.1	Wheat	mitochondrion	78.94	79.59
TraesCS4A01G013400.2	Wheat	mitochondrion	79.55	79.39
GSMUA_Achr1P22830_001	Banana	mitochondrion	63.8	77.23
HORVU4Hr1G075740.9	Barley	mitochondrion	76.89	76.73
KRH24707	Soybean	mitochondrion	42.54	66.03
Solyc09g074100.2.1	Tomato	plastid	61.76	62.4
Bra030447.1-P	Field mustard	plastid	59.92	61.55
PGSC0003DMT400009817	Potato	plastid	60.53	61.28
KRH29712	Soybean	mitochondrion	61.96	60.36
Bra014273.1-P	Field mustard	plastid	59.51	59.88
CDY65470	Canola	plastid	59.92	59.8
AT1G51310.1	Thale cress	plastid	59.1	58.15
CDY03630	Canola	plastid	58.49	58.13
CDY29626	Canola	plastid	59.51	56.84
VIT_06s0004g02080.t01	Wine grape	plastid	61.55	55.74
KRH38623	Soybean	extracellular	11.86	53.7
CDY35562	Canola	plastid	50.1	53.61
CDY03633	Canola	cytosol	18.61	50.84
CDY03632	Canola	cytosol	13.09	50.79

Protein Annotations

EntrezGene:100192515	MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	UniProt:A0A1D6JQ87
InterPro:Adenine_a_hdrlase_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016783	InterPro:IPR014729	InterPro:IPR023382
HAMAP:MF_00144	ProteinID:ONL94156.1	PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402
TIGRFAMs:TIGR00420	UniParc:UPI00084323EF	EnsemblPlantsGene:Zm00001d027872	EnsemblPlants:Zm00001d027872_P001	EnsemblPlants:Zm00001d027872_T001	SEG:seg
InterPro:tRNA-specific_2-thiouridylase	:	:	:	:	:

Description

transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases

Coordinates

chr1:+:16011197..16017403

Molecular Weight (calculated)

55034.9 Da

IEP (calculated)

7.688

GRAVY (calculated)

-0.242

Length

489 amino acids

Sequence
(BLAST)

001: MVRVVVSTLP ALRPLLRRGS LLNHKPLPRS RLQPWPFCTL SSSPAAGAPS AAVKGEEVAL DKHLTRCAAA GIAPLRVAVL VSGGVDSSVA LRLLHAAGHR
101: CTAFYLKIWF QEDFRNFWSE CPWDEDLKYA QAVCDKIDVP LEVVHLSDEY WNHVVSHMIN EYRCGRTPNP DVLCNTRIKF GMNWSFLEAI ENLGFDYIAS
201: GHYAHVVHPS AENTEAPSVL QLSKDKIKDQ TYFLSHLSQS QLRRLLFPLG CITKDEVRRL ATQMGLPNQG RKDSQGICFL GKVKFSEFVE RHIGEKEGII
301: LEAESGDYLG IHRGFWFYTI GQRQGLRLPG GPWYVVEKDV QNNVVFVSRN YYSLDKRRRT FRVGSLNWFD NCGPGNNEQL KCKVRHSPEF HDCTLVKERS
401: EENGDALVVH LAEDDQGLAA GQFAAFYSEN VCLGSGIILD SWDKMSFPVC SRALEIAKLA DKSSLGKPIR IVNLEHIVKP EQQEEIKVA

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.