Factsheet for VIT_06s0004g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P22830_001	Banana	mitochondrion	58.52	78.22
PGSC0003DMT400009817	Potato	plastid	65.37	73.08
Solyc09g074100.2.1	Tomato	plastid	65.19	72.73
Bra030447.1-P	Field mustard	plastid	62.59	71.01
KRH29712	Soybean	mitochondrion	65.56	70.52
KRH24707	Soybean	mitochondrion	40.56	69.52
Bra014273.1-P	Field mustard	plastid	61.67	68.52
CDY65470	Canola	plastid	61.67	67.96
AT1G51310.1	Thale cress	plastid	62.22	67.61
CDY03630	Canola	plastid	60.93	66.87
CDY29626	Canola	plastid	62.22	65.62
TraesCS4D01G289400.1	Wheat	mitochondrion	58.7	65.36
TraesCS4B01G290300.1	Wheat	mitochondrion	57.78	64.33
Os03t0174600-01	Rice	mitochondrion	57.96	64.14
HORVU4Hr1G075740.9	Barley	mitochondrion	58.15	64.08
EER95411	Sorghum	mitochondrion	57.78	63.8
TraesCS4A01G013400.2	Wheat	mitochondrion	57.59	63.47
CDY35562	Canola	plastid	53.52	63.24
Zm00001d027872_P001	Maize	mitochondrion	55.74	61.55
KRH38623	Soybean	extracellular	11.67	58.33
CDY03633	Canola	cytosol	18.7	56.42
CDY03632	Canola	cytosol	12.59	53.97

Protein Annotations

EntrezGene:100265527	wikigene:100265527	MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620
InterPro:Adenine_a_hdrlase_dom	ProteinID:CCB43711	ProteinID:CCB43711.1	UniProt:F6GU47	EMBL:FN594951	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016783	InterPro:IPR014729	InterPro:IPR023382	EntrezGene:LOC100265527	wikigene:LOC100265527
HAMAP:MF_00144	PFAM:PF03054	PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00420
UniParc:UPI0001983662	ArrayExpress:VIT_06s0004g02080	EnsemblPlantsGene:VIT_06s0004g02080	EnsemblPlants:VIT_06s0004g02080.t01	RefSeq:XP_002282827	RefSeq:XP_002282827.1
SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:	:	:	:

Description

No Description!

Coordinates

chr6:-:2546175..2553974

Molecular Weight (calculated)

60679.6 Da

IEP (calculated)

7.606

GRAVY (calculated)

-0.273

Length

540 amino acids

Sequence
(BLAST)

001: MAATPSLTSL SLRNPNLRFC ISLFSPKPFS LCFLPNLRPS ITTAAVAATS AAASGTTTIT TPPSNLFNAD LQPYLSCSLP NNRLKIAVLL SGGVDSSVAL
101: RLLHAAGHSC TAFYLKIWFQ EDFENFWSEC PWEDDLKYAK AVCDQVDVPL EVVHLTDEYW KNVVSYIIEE YRCGRTPNPD VLCNTRIKFG AFMDAISSKE
201: FDYVASGHYA NVVHSFTDQM DKPSVLELSK DMVKDQTYFL SHLSQIQLKR LIFPLGCIPK DEVRSLATKL DLPNRDRKDS QGICFLGKIK FSEFVARHIG
301: EKEGIILEAE TGDLLGKHRG FWFYTIGQRQ GLRLPGGPWY VVEKDVKNNV VFVSRNYFSL DKRRRLFRVG SLKWISREPP GQINQLQCKV RHGPGFYNCS
401: FTMEPGEDGH EDVAVVQLSE DDQGLAAGQF TAFYQGRSCI GSGVILESWD DQGFPVCAKA LEIARMEDKS KLGKPVKIKV RPETPPKGSD QIDGIKLDRE
501: LANSQAAVTD EISRSSEGEA RSRFPMNWLQ KIREKWLQML

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.