Factsheet for TraesCS4A01G013400.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G290300.1	Wheat	mitochondrion	92.24	93.2
TraesCS4D01G289400.1	Wheat	mitochondrion	88.37	89.28
HORVU4Hr1G075740.9	Barley	mitochondrion	88.16	88.16
EER95411	Sorghum	mitochondrion	81.22	81.39
Os03t0174600-01	Rice	mitochondrion	81.02	81.35
Zm00001d027872_P001	Maize	mitochondrion	79.39	79.55
GSMUA_Achr1P22830_001	Banana	mitochondrion	64.08	77.72
KRH24707	Soybean	mitochondrion	41.84	65.08
PGSC0003DMT400009817	Potato	plastid	62.45	63.35
Solyc09g074100.2.1	Tomato	plastid	61.84	62.6
KRH29712	Soybean	mitochondrion	63.47	61.95
Bra030447.1-P	Field mustard	plastid	59.8	61.55
Bra014273.1-P	Field mustard	plastid	60.2	60.7
CDY65470	Canola	plastid	60.41	60.41
CDY03630	Canola	plastid	59.39	59.15
AT1G51310.1	Thale cress	plastid	59.8	58.95
VIT_06s0004g02080.t01	Wine grape	plastid	63.47	57.59
CDY29626	Canola	plastid	58.98	56.45
KRH38623	Soybean	extracellular	12.24	55.56
CDY35562	Canola	plastid	50.61	54.27
CDY03632	Canola	cytosol	13.27	51.59
CDY03633	Canola	cytosol	18.37	50.28

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	InterPro:Adenine_a_hdrlase_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016783	InterPro:IPR014729	InterPro:IPR023382	HAMAP:MF_00144	PFAM:PF03054
PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00420	EnsemblPlantsGene:TraesCS4A01G013400	EnsemblPlants:TraesCS4A01G013400.2
TIGR:cd01998	SEG:seg	InterPro:tRNA-specific_2-thiouridylase	:	:	:

Description

No Description!

Coordinates

chr4A:-:7738895..7741724

Molecular Weight (calculated)

55109.9 Da

IEP (calculated)

7.192

GRAVY (calculated)

-0.291

Length

490 amino acids

Sequence
(BLAST)

001: MLRVVSTLRP LLRSPLLRSP LLPGPKPLPR PRRPPRPFRA LSSAAPLAAS PPSAPAPAPG EVEISEEHLI RCAAARRAPL RVAVLVSGGV DSSVALRLLH
101: AAGHSCTAFY LKIWFQEDFR NFWSECPWDD DLKYAQAVCD KIDVPLEVVH LSDEYWNHVV SHMINEYRNG RTPNPDVLCN TRIKFGAFLE AIENLGFDYI
201: ASGHYAHVVH PPVENAEGPS VLQLSKDEIK DQTYFLSHLS QPQLRRLLFP LGCITKDEVR SLAVQMGLPN QYRKDSQGIC FLGKVKFSEF VQRHIGEMEG
301: ILLEAETGDY LGTHRGFWFY TIGQRQGLRL SGGPWYVVEK DVQNNVVFVS RNYYSLDKRR RTFRVGSLNW FSDSGPADNE FLRCKVRHSP DFHDCTVTKE
401: QTEENGDVLA VRLSEDDQGL AAGQFAAFYR DSVCLGSGII LDSWDEMSFP VCAKALETAR MEDKSKLGKP VRIMNLEHLV KPEPEPAKVA

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.