Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014273.1-P | Field mustard | plastid | 85.51 | 87.45 |
| CDY65470 | Canola | plastid | 85.71 | 86.94 |
| CDY03630 | Canola | plastid | 85.11 | 85.98 |
| GSMUA_Achr1P22830_001 | Banana | mitochondrion | 58.75 | 72.28 |
| KRH24707 | Soybean | mitochondrion | 43.26 | 68.25 |
| PGSC0003DMT400009817 | Potato | plastid | 65.39 | 67.29 |
| Solyc09g074100.2.1 | Tomato | plastid | 65.39 | 67.15 |
| KRH29712 | Soybean | mitochondrion | 66.8 | 66.14 |
| VIT_06s0004g02080.t01 | Wine grape | plastid | 67.61 | 62.22 |
| CDY03632 | Canola | cytosol | 15.69 | 61.9 |
| Os03t0174600-01 | Rice | mitochondrion | 59.56 | 60.66 |
| TraesCS4B01G290300.1 | Wheat | mitochondrion | 58.75 | 60.21 |
| HORVU4Hr1G075740.9 | Barley | mitochondrion | 59.36 | 60.2 |
| TraesCS4D01G289400.1 | Wheat | mitochondrion | 58.55 | 60.0 |
| TraesCS4A01G013400.2 | Wheat | mitochondrion | 58.95 | 59.8 |
| EER95411 | Sorghum | mitochondrion | 58.75 | 59.71 |
| Zm00001d027872_P001 | Maize | mitochondrion | 58.15 | 59.1 |
| KRH38623 | Soybean | extracellular | 12.47 | 57.41 |
Protein Annotations
| MapMan:16.12.3.1.1.1 | Gene3D:2.30.30.280 | Gene3D:2.40.30.10 | Gene3D:3.40.50.620 | EntrezGene:841554 | UniProt:A0A178WIM9 |
| ProteinID:AEE32649.1 | ArrayExpress:AT1G51310 | EnsemblPlantsGene:AT1G51310 | RefSeq:AT1G51310 | TAIR:AT1G51310 | RefSeq:AT1G51310-TAIR-G |
| EnsemblPlants:AT1G51310.1 | TAIR:AT1G51310.1 | InterPro:Adenine_a_hdrlase_dom | Unigene:At.37843 | UniProt:F4I824 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006139 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016783 | GO:GO:0032259 | InterPro:IPR014729 | InterPro:IPR023382 |
| HAMAP:MF_00144 | RefSeq:NP_175542.2 | ProteinID:OAP18116.1 | PFAM:PF03054 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR43052 |
| InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | TIGRFAMs:TIGR00420 | UniParc:UPI00015057AC | SEG:seg | InterPro:tRNA-specific_2-thiouridylase |
Description
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
Coordinates
chr1:-:19018941..19021808
Molecular Weight (calculated)
55824.5 Da
IEP (calculated)
6.636
GRAVY (calculated)
-0.238
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.