CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014273.1-P	Field mustard	plastid	98.16	98.97
CDY03630	Canola	plastid	95.31	94.92
AT1G51310.1	Thale cress	plastid	86.94	85.71
CDY29626	Canola	plastid	81.63	78.12
CDY35562	Canola	plastid	69.59	74.62
GSMUA_Achr1P22830_001	Banana	mitochondrion	58.98	71.53
CDY03633	Canola	cytosol	24.9	68.16
KRH24707	Soybean	mitochondrion	43.27	67.3
PGSC0003DMT400009817	Potato	plastid	65.92	66.87
Solyc09g074100.2.1	Tomato	plastid	65.51	66.32
KRH29712	Soybean	mitochondrion	67.55	65.94
CDY03632	Canola	cytosol	16.33	63.49
VIT_06s0004g02080.t01	Wine grape	plastid	67.96	61.67
TraesCS4B01G290300.1	Wheat	mitochondrion	60.61	61.24
TraesCS4D01G289400.1	Wheat	mitochondrion	60.41	61.03
Os03t0174600-01	Rice	mitochondrion	60.61	60.86
TraesCS4A01G013400.2	Wheat	mitochondrion	60.41	60.41
HORVU4Hr1G075740.9	Barley	mitochondrion	60.41	60.41
EER95411	Sorghum	mitochondrion	60.2	60.33
Zm00001d027872_P001	Maize	mitochondrion	59.8	59.92
KRH38623	Soybean	extracellular	12.24	55.56
CDY29625	Canola	endoplasmic reticulum, plasma membrane	10.0	13.03
CDY35563	Canola	plasma membrane	9.8	12.77

Protein Annotations

MapMan:16.12.3.1.1.1	Gene3D:2.30.30.280	Gene3D:2.40.30.10	Gene3D:3.40.50.620	GO:A0A078JG50	UniProt:A0A078JG50
InterPro:Adenine_a_hdrlase_dom	EnsemblPlants:CDY65470	ProteinID:CDY65470	ProteinID:CDY65470.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016783	EnsemblPlantsGene:GSBRNA2T00046649001	InterPro:IPR014729	InterPro:IPR023382	HAMAP:MF_00144	PFAM:PF03054
PANTHER:PTHR43052	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00420	UniParc:UPI0004EDB1E1	SEG:seg
InterPro:tRNA-specific_2-thiouridylase	:	:	:	:	:

Description

BnaA08g29550DBnaA08g29550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG50]

Coordinates

chrLK034800:-:6106..8644

Molecular Weight (calculated)

55037.8 Da

IEP (calculated)

7.226

GRAVY (calculated)

-0.237

Length

490 amino acids

Sequence
(BLAST)

001: MFSTVMKPLL SPSPSLFRLP PLSSSLSVLF HVFPFSSSSS PFHSPHPITP LRSSRRNYIP HHASLSDHYL SCSVPEKPLR VAVLLSGGVD SSVALRLLHA
101: AGHSCTAFYL KIWFQEGFEN FWNQCPWEDD LKYAKHVCEQ VGVPLEVVHL TDEYWERVVS YIIEEYKCGR TPNPDVLCNT RIKFGAFMDA ISDMEYDYVA
201: SGHYAKVAHP PAGPSVLQLS QDMVKDQTYF LSHLSQTQLK RLLFPLGCVK KDEVRKLATQ FDLPNKDRKD SQGICFLGKI KFSDFVGRHI GEKEGIILEA
301: ETGDFLGKHR GFWFYTIGQR QGLRLPGGPW YVVEKDTKNN VVFVSRDYYS IDKRRRVFRV GSLRWLSGKP SGNVSQLRCK VRHGPGFYSC SFEMEAEGDV
401: AVVHLDEDDQ GLAAGQFAAF YEGTACIGSG VILESWDDQC FPVCEKALQL AAVEDKSKLG KPVKIMTMPV TTSVEAEPGE TSREEKLLNA

Best Arabidopsis Sequence Match ( AT1G51310.1 )
(BLAST)

001: MFSAVAKPFL SPSPPLFRLP LSSISISFRV FPSFFSSSSS SQLPSPQSSN PITPLISSNR NYSRHAFIVD QYLSCSMPEK PLRVAVLLSG GVDSSVALRL
101: LHAAGHSCTA FYLKIWFQEG FENFWNQCPW EDDLKYAKHV CEQVDVPLEV VHLTDEYWER VVSYIIEEYR CGRTPNPDVL CNTRIKFGAF MDAISDMEYD
201: YVGSGHYAKV VHPPADQNDA SSVLELSQDM VKDQTYFLSH LSQTQLKRLL FPLGCVKKDE VRKLATQFDL PNKDRKDSQG ICFLGKIKFS DFVCRHIGEM
301: EGIILEAESG DFLGNHRGFW FYTIGQRQGL RLPGGPWYVV EKDTKNNVVF VSRNYYSIDK RRRIFRVGSL RWNSGKPSGK VRELRCKVRH GPGFYSCSFE
401: MEGDGDVAVV HLDEDDQGLA AGQFAAFYEG TTCIGSGVIL ESWDDQCFPV CAKALQLAAL EDKTKLGKPV KIMTMPTMSS VEADTGEASA EQKLVNA

Arabidopsis Description

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4I824]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.