CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	75.71	98.94
AT1G13380.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	68.83	90.43
KRH45268	Soybean	extracellular	58.7	75.92
Solyc05g009330.2.1	Tomato	plasma membrane	57.89	75.26
VIT_01s0011g03560.t01	Wine grape	extracellular	57.89	75.26
KRH75370	Soybean	extracellular	57.09	73.82
PGSC0003DMT400037709	Potato	plasma membrane	56.28	73.16
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	55.47	72.87
HORVU7Hr1G083180.1	Barley	extracellular	52.23	67.54
Os09t0281300-02	Rice	endoplasmic reticulum, plasma membrane	51.82	67.37
TraesCS7D01G345300.1	Wheat	extracellular	51.82	67.02
TraesCS7B01G249300.1	Wheat	extracellular	51.82	67.02
TraesCS7A01G338100.1	Wheat	extracellular	51.82	67.02
EER88397	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	50.61	65.79
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	47.37	56.25
Zm00001d037463_P001	Maize	plasma membrane	50.2	51.67
CDX89250	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.39	46.24
CDY29310	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.39	46.24
CDX92831	Canola	endoplasmic reticulum, extracellular, vacuole	31.98	45.66
CDY02534	Canola	endoplasmic reticulum, extracellular, vacuole	31.98	45.14
CDY29839	Canola	endoplasmic reticulum, extracellular, vacuole	31.58	45.09
CDY56821	Canola	endoplasmic reticulum, extracellular, vacuole	31.17	44.0
CDY53808	Canola	endoplasmic reticulum, extracellular, vacuole	31.17	44.0
CDY26029	Canola	endoplasmic reticulum, extracellular, vacuole	31.17	44.0
CDX97672	Canola	endoplasmic reticulum, plasma membrane, vacuole	29.55	41.71
CDY67483	Canola	extracellular	28.74	39.44
CDY50209	Canola	extracellular	28.74	39.44
CDY01897	Canola	extracellular	30.36	37.69
CDX96039	Canola	extracellular	30.36	37.69
CDY52490	Canola	extracellular	12.15	34.88

Protein Annotations

EnsemblPlants:CDY19370	EnsemblPlantsGene:GSBRNA2T00008906001	GO:A0A078FY97	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF5	PFAM:PF06749	ProteinID:CDY19370	ProteinID:CDY19370.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE6901	UniProt:A0A078FY97	MapMan:35.2	:

Description

BnaC05g08790DBnaC05g08790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY97]

Coordinates

chrLK032095:+:365599..366971

Molecular Weight (calculated)

26641.7 Da

IEP (calculated)

9.868

GRAVY (calculated)

0.531

Length

247 amino acids

Sequence
(BLAST)

001: MTFILESACY TRAVTHVLIV STRLTGRVFA LLAHFQLSLT HLVGSAKKKK SLSLSFAGVM GEGKGSTLVF ILVIALCLVA FGFSIAAERR RSIGKSIQDP
101: ITNATYCVYS SDVATGYGVG AFLFLLSSES LLMGVTKCMC FGRPLSPGSD RAWSIIYFIS SWMTFLVAEA CLIAGATKNA YHTKYLSAQA FSCESLRKGI
201: FIAGAVFTVA TMILNVYYYF HFTKSVSSPP THKANRSGSN IGMAGYA

Best Arabidopsis Sequence Match ( AT1G13380.1 )
(BLAST)

001: MGEGKASTLV FILVVALSLV AFGFSIAAER RRSIGKSIQD PITNTTFCVY DSDVATGYGV GAFLFLLSSE SLLMSVTKCM CFGRPLAPGS DRAWSIIYFI
101: SSWMTFLVAE ACVIAGATKN AYHTKYLSSQ TFSCASLRKG IFIAGAVFIV ATMVLNVYYY MYFTKSVSSP PAHKANRSSS NIGMAGYA

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9FX59]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.