CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030968.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	83.43	100.0
CDY26029	Canola	endoplasmic reticulum, extracellular, vacuole	96.0	96.0
CDY53808	Canola	endoplasmic reticulum, extracellular, vacuole	95.43	95.43
AT1G52910.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	85.71	85.71
CDY56821	Canola	endoplasmic reticulum, extracellular, vacuole	82.86	82.86
CDX97672	Canola	endoplasmic reticulum, plasma membrane, vacuole	81.14	81.14
CDX89250	Canola	endoplasmic reticulum, plasma membrane, vacuole	62.29	63.01
CDY29310	Canola	endoplasmic reticulum, plasma membrane, vacuole	62.29	63.01
CDX92831	Canola	endoplasmic reticulum, extracellular, vacuole	60.57	61.27
CDY29839	Canola	endoplasmic reticulum, extracellular, vacuole	60.0	60.69
CDY50209	Canola	extracellular	52.57	51.11
CDY67483	Canola	extracellular	52.57	51.11
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	50.29	48.09
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	50.29	47.06
Os04t0678200-01	Rice	plasma membrane	47.43	45.36
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.29	45.25
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.86	44.57
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.29	44.02
CDY52490	Canola	extracellular	21.14	43.02
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	44.57	41.27
TraesCS2A01G591800.1	Wheat	extracellular	24.0	40.38
CDX96039	Canola	extracellular	43.43	38.19
CDY01897	Canola	extracellular	42.86	37.69
CDY19370	Canola	plasma membrane, plastid	45.14	31.98

Protein Annotations

EnsemblPlants:CDY02534	EnsemblPlantsGene:GSBRNA2T00114211001	GO:A0A078EPG2	InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39
PFAM:PF06749	ProteinID:CDY02534	ProteinID:CDY02534.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0004EEAB5C	MapMan:35.2	:	:	:	:

Description

BnaA08g01410D

Coordinates

chrLK031935:-:831091..833101

Molecular Weight (calculated)

19344.9 Da

IEP (calculated)

8.461

GRAVY (calculated)

0.599

Length

175 amino acids

Sequence
(BLAST)

001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDKEKV YEYCEYGSDI ATSYGAGAFV LLLTTQVIIM LASKCFCCGK ALSPGGSRAC AIILFLICWV
101: FFLIAEICLL AASIRNAYHT KYRKMWNVDE PPSCEVIRKG VFAAGASFAL FTAIVSQFYY VCYSRARDDY KNPPY

Best Arabidopsis Sequence Match ( AT1G52910.1 )
(BLAST)

001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY

Arabidopsis Description

At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.