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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 5
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 6
  • vacuole 6
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89250 Canola endoplasmic reticulum, plasma membrane, vacuole 98.84 98.84
AT4G27435.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 96.53 96.53
CDX92831 Canola endoplasmic reticulum, extracellular, vacuole 94.22 94.22
CDY29839 Canola endoplasmic reticulum, extracellular, vacuole 93.06 93.06
CDY26029 Canola endoplasmic reticulum, extracellular, vacuole 64.16 63.43
CDY56821 Canola endoplasmic reticulum, extracellular, vacuole 63.58 62.86
CDY53808 Canola endoplasmic reticulum, extracellular, vacuole 63.58 62.86
CDY02534 Canola endoplasmic reticulum, extracellular, vacuole 63.01 62.29
CDX97672 Canola endoplasmic reticulum, plasma membrane, vacuole 61.27 60.57
CDY50209 Canola extracellular 53.76 51.67
CDY67483 Canola extracellular 53.76 51.67
Os04t0678200-01 Rice plasma membrane 53.76 50.82
EES11652 Sorghum endoplasmic reticulum, extracellular, vacuole 53.18 50.27
Zm00001d026625_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 51.45 47.59
TraesCS2A01G591700.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 45.09 43.58
CDY52490 Canola extracellular 21.39 43.02
TraesCS2B01G592000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 45.09 42.39
TraesCS2D01G562500.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 45.09 42.39
CDX97989 Canola endoplasmic reticulum, extracellular, plasma membrane 46.24 42.33
TraesCS2A01G591800.1 Wheat extracellular 22.54 37.5
CDY01897 Canola extracellular 42.77 37.19
CDX96039 Canola extracellular 42.77 37.19
CDY19370 Canola plasma membrane, plastid 46.24 32.39
Protein Annotations
EnsemblPlants:CDY29310EnsemblPlantsGene:GSBRNA2T00042279001GO:A0A078GS54GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:DUF1218PANTHER:PTHR31769PANTHER:PTHR31769:SF39PFAM:PF06749ProteinID:CDY29310ProteinID:CDY29310.1
SEG:segSignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0004EF1243UniProt:A0A078GS54MapMan:35.2
Description
BnaC01g19620DBnaC01g19620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS54]
Coordinates
chrLK032234:+:467487..468846
Molecular Weight (calculated)
19049.2 Da
IEP (calculated)
8.343
GRAVY (calculated)
0.602
Length
173 amino acids
Sequence
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST AKVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQLLIM LVSRCFCCGK PLKPGGSRAL ALVLFIVSWI
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAADASL SPY
Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.