Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 6
- vacuole 6
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 98.84 | 98.84 |
AT4G27435.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 96.53 | 96.53 |
CDX92831 | Canola | endoplasmic reticulum, extracellular, vacuole | 94.22 | 94.22 |
CDY29839 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.06 | 93.06 |
CDY26029 | Canola | endoplasmic reticulum, extracellular, vacuole | 64.16 | 63.43 |
CDY56821 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.58 | 62.86 |
CDY53808 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.58 | 62.86 |
CDY02534 | Canola | endoplasmic reticulum, extracellular, vacuole | 63.01 | 62.29 |
CDX97672 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 61.27 | 60.57 |
CDY50209 | Canola | extracellular | 53.76 | 51.67 |
CDY67483 | Canola | extracellular | 53.76 | 51.67 |
Os04t0678200-01 | Rice | plasma membrane | 53.76 | 50.82 |
EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 53.18 | 50.27 |
Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.45 | 47.59 |
TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 43.58 |
CDY52490 | Canola | extracellular | 21.39 | 43.02 |
TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 42.39 |
TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 42.39 |
CDX97989 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 46.24 | 42.33 |
TraesCS2A01G591800.1 | Wheat | extracellular | 22.54 | 37.5 |
CDY01897 | Canola | extracellular | 42.77 | 37.19 |
CDX96039 | Canola | extracellular | 42.77 | 37.19 |
CDY19370 | Canola | plasma membrane, plastid | 46.24 | 32.39 |
Protein Annotations
EnsemblPlants:CDY29310 | EnsemblPlantsGene:GSBRNA2T00042279001 | GO:A0A078GS54 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | ProteinID:CDY29310 | ProteinID:CDY29310.1 |
SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EF1243 | UniProt:A0A078GS54 | MapMan:35.2 |
Description
BnaC01g19620DBnaC01g19620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS54]
Coordinates
chrLK032234:+:467487..468846
Molecular Weight (calculated)
19049.2 Da
IEP (calculated)
8.343
GRAVY (calculated)
0.602
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST AKVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQLLIM LVSRCFCCGK PLKPGGSRAL ALVLFIVSWI
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAADASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAADASL SPY
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.