Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29839 | Canola | endoplasmic reticulum, extracellular, vacuole | 97.69 | 97.69 |
| CDY29310 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 94.22 | 94.22 |
| CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 93.64 | 93.64 |
| AT4G27435.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 93.64 | 93.64 |
| CDY53808 | Canola | endoplasmic reticulum, extracellular, vacuole | 62.43 | 61.71 |
| CDY26029 | Canola | endoplasmic reticulum, extracellular, vacuole | 62.43 | 61.71 |
| CDY56821 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.85 | 61.14 |
| CDY02534 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.27 | 60.57 |
| CDX97672 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.54 | 58.86 |
| CDY50209 | Canola | extracellular | 53.76 | 51.67 |
| CDY67483 | Canola | extracellular | 53.76 | 51.67 |
| Os04t0678200-01 | Rice | plasma membrane | 54.34 | 51.37 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 51.45 | 48.63 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 50.29 | 46.52 |
| CDY52490 | Canola | extracellular | 21.39 | 43.02 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.51 | 43.02 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.51 | 41.85 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.51 | 41.85 |
| CDX97989 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 45.66 | 41.8 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 22.54 | 37.5 |
| CDY01897 | Canola | extracellular | 42.77 | 37.19 |
| CDX96039 | Canola | extracellular | 42.77 | 37.19 |
| CDY19370 | Canola | plasma membrane, plastid | 45.66 | 31.98 |
Protein Annotations
| EnsemblPlants:CDX92831 | EnsemblPlantsGene:GSBRNA2T00154664001 | GO:A0A078DU79 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 |
| PFAM:PF06749 | ProteinID:CDX92831 | ProteinID:CDX92831.1 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI0004EDD4F2 | MapMan:35.2 | : | : | : | : |
Description
BnaC07g40890D
Coordinates
chrLK031873:+:1002627..1003972
Molecular Weight (calculated)
19146.3 Da
IEP (calculated)
8.091
GRAVY (calculated)
0.586
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKIVSAIV FVFNLVAFGL AVAAEQRRST ATVVQDTEVQ YNYCVYDSDR ATGYGIGAFF FSVASQLLIM LVSRCFCCGK PLKPGGSRAL ALVLFIVSWM
101: FFLIAETCLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAAEAFP LPY
101: FFLIAETCLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAAEAFP LPY
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.