Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68220.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT1G68220.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004290.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 96.98 | 96.98 |
| CDX96039 | Canola | extracellular | 96.98 | 96.98 |
| AT1G68220.1 | Thale cress | extracellular | 89.95 | 89.05 |
| VIT_01s0011g04020.t01 | Wine grape | extracellular | 66.83 | 68.91 |
| KRH35900 | Soybean | extracellular | 64.82 | 66.15 |
| PGSC0003DMT400078545 | Potato | extracellular | 63.82 | 65.46 |
| Solyc05g008900.2.1 | Tomato | extracellular | 63.32 | 64.95 |
| EES14816 | Sorghum | plasma membrane | 48.24 | 48.24 |
| Zm00001d050182_P001 | Maize | plasma membrane | 47.74 | 47.74 |
| Zm00001d024066_P001 | Maize | plasma membrane | 47.74 | 47.74 |
| TraesCS7A01G022500.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 47.74 | 47.5 |
| Os08t0261100-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 46.23 | 46.23 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 57.79 | 44.75 |
| CDY02534 | Canola | endoplasmic reticulum, extracellular, vacuole | 37.69 | 42.86 |
| CDY29839 | Canola | endoplasmic reticulum, extracellular, vacuole | 37.19 | 42.77 |
| CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 37.19 | 42.77 |
| CDX92831 | Canola | endoplasmic reticulum, extracellular, vacuole | 37.19 | 42.77 |
| CDY29310 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 37.19 | 42.77 |
| TraesCS7D01G019700.1 | Wheat | plasma membrane | 47.74 | 42.6 |
| CDY26029 | Canola | endoplasmic reticulum, extracellular, vacuole | 37.19 | 42.29 |
| CDY53808 | Canola | endoplasmic reticulum, extracellular, vacuole | 37.19 | 42.29 |
| TraesCS4A01G470000.1 | Wheat | endoplasmic reticulum | 47.74 | 42.04 |
| CDY56821 | Canola | endoplasmic reticulum, extracellular, vacuole | 36.68 | 41.71 |
| CDY67483 | Canola | extracellular | 36.18 | 40.0 |
| CDY50209 | Canola | extracellular | 36.18 | 40.0 |
| CDX97989 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 37.69 | 39.68 |
| CDX97672 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 34.17 | 38.86 |
| HORVU7Hr1G002450.1 | Barley | plastid | 48.24 | 37.07 |
| CDY52490 | Canola | extracellular | 15.08 | 34.88 |
| HORVU1Hr1G013960.1 | Barley | extracellular | 19.1 | 34.55 |
| CDY19370 | Canola | plasma membrane, plastid | 37.69 | 30.36 |
Protein Annotations
| EnsemblPlants:CDY01897 | EnsemblPlantsGene:GSBRNA2T00113092001 | GO:A0A078EL73 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF3 |
| PFAM:PF06749 | ProteinID:CDY01897 | ProteinID:CDY01897.1 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EEC602 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC06g29370D
Coordinates
chrLK031929:+:1089501..1090706
Molecular Weight (calculated)
21087.5 Da
IEP (calculated)
8.122
GRAVY (calculated)
0.430
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSVPILAV VTSLHLLAFV FAFGAERRRS TAVPVPDQYD EKTFCRYGTD ASTVYGMSAF ALLLVSQAVV NGVTKCLCCG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLAGSAKNAY HTKSKGVFQG KELSCAVLPV GVFAAGAAFT LLSLIATILY YLAHSKADTG GWEKHHNDGI GMTTPADAPK QQNTDFDKA
101: WVSFLGAEAC LLAGSAKNAY HTKSKGVFQG KELSCAVLPV GVFAAGAAFT LLSLIATILY YLAHSKADTG GWEKHHNDGI GMTTPADAPK QQNTDFDKA
001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
Arabidopsis Description
Aerobic coproporphyrinogen-III oxidase (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q9C9F7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.