Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68220.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT1G68220.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96039 | Canola | extracellular | 97.99 | 97.99 |
| CDY01897 | Canola | extracellular | 96.98 | 96.98 |
| AT1G68220.1 | Thale cress | extracellular | 89.95 | 89.05 |
| VIT_01s0011g04020.t01 | Wine grape | extracellular | 66.83 | 68.91 |
| KRH35900 | Soybean | extracellular | 64.82 | 66.15 |
| PGSC0003DMT400078545 | Potato | extracellular | 63.32 | 64.95 |
| Solyc05g008900.2.1 | Tomato | extracellular | 62.81 | 64.43 |
| EES14816 | Sorghum | plasma membrane | 48.24 | 48.24 |
| Zm00001d050182_P001 | Maize | plasma membrane | 47.74 | 47.74 |
| Zm00001d024066_P001 | Maize | plasma membrane | 47.74 | 47.74 |
| TraesCS7A01G022500.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 47.74 | 47.5 |
| Os08t0261100-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 46.23 | 46.23 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 57.29 | 44.36 |
| Bra030968.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 31.66 | 43.15 |
| Bra019050.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 37.19 | 42.77 |
| TraesCS7D01G019700.1 | Wheat | plasma membrane | 47.74 | 42.6 |
| Bra019000.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 37.19 | 42.29 |
| TraesCS4A01G470000.1 | Wheat | endoplasmic reticulum | 47.74 | 42.04 |
| Bra027240.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 36.68 | 41.71 |
| Bra026350.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 36.18 | 41.62 |
| Bra019828.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 38.19 | 40.21 |
| Bra031458.1-P | Field mustard | extracellular | 16.08 | 37.21 |
| HORVU7Hr1G002450.1 | Barley | plastid | 48.24 | 37.07 |
| HORVU1Hr1G013960.1 | Barley | extracellular | 19.1 | 34.55 |
Protein Annotations
| EnsemblPlants:Bra004290.1 | EnsemblPlants:Bra004290.1-P | EnsemblPlantsGene:Bra004290 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF3 | PFAM:PF06749 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002541735 | UniProt:M4CJA6 | MapMan:35.2 | : |
Description
AT1G68220 (E=5e-101) | unknown protein
Coordinates
chrA07:+:17810927..17811817
Molecular Weight (calculated)
21176.6 Da
IEP (calculated)
7.821
GRAVY (calculated)
0.409
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSVPILAV VTSLHLLAFV FAFGAERRRS TAVPVPDQYD EQTFCRYGTD ASTVYGMSAF ALLLVSQAVV NGVTKCLCCG KGLVTGTSYT VWAIIFFVVS
101: WVSFLGAEAC LLAGSAKNAY HTKSKGVFQG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHHNDGI GMTTPSDAPK QQNNDFDKV
101: WVSFLGAEAC LLAGSAKNAY HTKSKGVFQG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHHNDGI GMTTPSDAPK QQNNDFDKV
001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
Arabidopsis Description
Aerobic coproporphyrinogen-III oxidase (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q9C9F7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.