Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68220.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14816 | Sorghum | plasma membrane | 95.48 | 95.48 |
| Zm00001d024066_P001 | Maize | plasma membrane | 91.96 | 91.96 |
| Os08t0261100-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 83.42 | 83.42 |
| TraesCS7A01G022500.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 82.41 | 82.0 |
| TraesCS7D01G019700.1 | Wheat | plasma membrane | 81.91 | 73.09 |
| TraesCS4A01G470000.1 | Wheat | endoplasmic reticulum | 81.91 | 72.12 |
| HORVU7Hr1G002450.1 | Barley | plastid | 81.91 | 62.93 |
| HORVU1Hr1G013960.1 | Barley | extracellular | 30.65 | 55.45 |
| VIT_01s0011g04020.t01 | Wine grape | extracellular | 53.27 | 54.92 |
| KRH35900 | Soybean | extracellular | 52.26 | 53.33 |
| PGSC0003DMT400078545 | Potato | extracellular | 51.76 | 53.09 |
| Solyc05g008900.2.1 | Tomato | extracellular | 51.26 | 52.58 |
| AT1G68220.1 | Thale cress | extracellular | 49.25 | 48.76 |
| Bra004290.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 47.74 | 47.74 |
| CDY01897 | Canola | extracellular | 47.74 | 47.74 |
| CDX96039 | Canola | extracellular | 47.74 | 47.74 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 57.79 | 44.75 |
| Zm00001d019597_P001 | Maize | plasma membrane | 39.7 | 43.41 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 40.7 | 43.32 |
| Zm00001d005394_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 39.7 | 42.7 |
| Zm00001d037463_P001 | Maize | plasma membrane | 39.2 | 32.5 |
Protein Annotations
| EMBL:EU960284 | EnsemblPlants:Zm00001d050182_P001 | EnsemblPlants:Zm00001d050182_T001 | EnsemblPlantsGene:Zm00001d050182 | EntrezGene:100282273 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF3 | PFAM:PF06749 |
| ProteinID:AQK52066.1 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000182D0E0 | UniProt:B6T5L9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Fiber protein Fb34
Coordinates
chr4:-:71328242..71331175
Molecular Weight (calculated)
21313.0 Da
IEP (calculated)
8.473
GRAVY (calculated)
0.490
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVFGTSRPA SVTLCAFLTF LNLFAFLLAV GAERRRSTGK VVPDEYDERS YCLYDTDAST VYGVSAFFVL LLQQAIVTAA TRCLCFGPVL SSRGCAVTAF
101: VLSWATFLIA EACLIGGSVR NAKHTKYLGY YTKHDLVSCA TLRKGVFAAA AAMMLVNLLA SLVCCWSYSK AATGGFMKHQ NEVGVGMTDY GLDRGVSGP
101: VLSWATFLIA EACLIGGSVR NAKHTKYLGY YTKHDLVSCA TLRKGVFAAA AAMMLVNLLA SLVCCWSYSK AATGGFMKHQ NEVGVGMTDY GLDRGVSGP
001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
Arabidopsis Description
Aerobic coproporphyrinogen-III oxidase (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q9C9F7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.