Factsheet for Zm00001d026625_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	85.03	86.89
Os04t0678200-01	Rice	plasma membrane	77.01	78.69
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	72.19	75.42
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	72.19	73.37
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.59	71.74
TraesCS2A01G591800.1	Wheat	extracellular	32.09	57.69
VIT_19s0014g03190.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	56.68	57.3
Zm00001d019597_P001	Maize	plasma membrane	55.62	57.14
Zm00001d005394_P001	Maize	endoplasmic reticulum, extracellular, vacuole	55.62	56.22
VIT_00s0652g00020.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.34	53.04
KRH22133	Soybean	extracellular, plasma membrane, vacuole	52.41	52.97
Solyc07g063340.2.1	Tomato	nucleus	51.87	52.15
CDX89250	Canola	endoplasmic reticulum, plasma membrane, vacuole	48.13	52.02
KRH27207	Soybean	endoplasmic reticulum	51.34	51.89
PGSC0003DMT400032432	Potato	endoplasmic reticulum, plasma membrane, vacuole	51.34	51.61
CDY29310	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.59	51.45
AT4G27435.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	47.59	51.45
Bra026350.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	47.59	51.45
PGSC0003DMT400039574	Potato	extracellular, plasma membrane, vacuole	50.8	51.08
PGSC0003DMT400057628	Potato	extracellular, plasma membrane, vacuole	49.2	50.55
Bra019050.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	46.52	50.29
CDX92831	Canola	endoplasmic reticulum, extracellular, vacuole	46.52	50.29
CDY26029	Canola	endoplasmic reticulum, extracellular, vacuole	47.06	50.29
CDY02534	Canola	endoplasmic reticulum, extracellular, vacuole	47.06	50.29
CDY53808	Canola	endoplasmic reticulum, extracellular, vacuole	47.06	50.29
Bra019000.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	47.06	50.29
KRH49998	Soybean	endoplasmic reticulum, extracellular, vacuole	49.2	50.27
Solyc12g013650.1.1	Tomato	extracellular, plasma membrane, vacuole	49.73	50.0
KRH25778	Soybean	extracellular	21.39	50.0
CDY56821	Canola	endoplasmic reticulum, extracellular, vacuole	46.52	49.71
AT3G15480.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	46.52	49.71
CDY29839	Canola	endoplasmic reticulum, extracellular, vacuole	45.99	49.71
KRH55341	Soybean	endoplasmic reticulum, extracellular, vacuole	24.6	49.46
Solyc02g078630.2.1	Tomato	extracellular, plasma membrane, vacuole	48.13	49.45
Bra030968.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	38.5	49.32
AT1G52910.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	45.99	49.14
Bra027240.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.99	49.14
AT1G61065.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	45.99	47.78
CDX97672	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.85	46.86
KRH20498	Soybean	endoplasmic reticulum, extracellular	44.92	45.9
CDY67483	Canola	extracellular	43.85	45.56
CDY50209	Canola	extracellular	43.85	45.56
PGSC0003DMT400039595	Potato	extracellular, mitochondrion	33.16	43.97
Bra031458.1-P	Field mustard	extracellular	19.79	43.02
Zm00001d050182_P001	Maize	plasma membrane	43.32	40.7
CDY52490	Canola	extracellular	18.18	39.53
Zm00001d024066_P001	Maize	plasma membrane	41.71	39.2
KRH13651	Soybean	endoplasmic reticulum, extracellular	22.46	37.5
Zm00001d037463_P001	Maize	plasma membrane	42.25	32.92

Protein Annotations

EnsemblPlants:Zm00001d026625_P001	EnsemblPlants:Zm00001d026625_T001	EnsemblPlantsGene:Zm00001d026625	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF18	PFAM:PF06749	ProteinID:AQK47286.1	SEG:seg
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00084434F0	UniProt:A0A1D6JI53	MapMan:35.2	:

Description

Fiber protein Fb34

Coordinates

chr10:+:149117610..149118649

Molecular Weight (calculated)

19892.6 Da

IEP (calculated)

9.919

GRAVY (calculated)

0.800

Length

187 amino acids

Sequence
(BLAST)

001: MASIIVIAVV LVLDVLAFVL AIGAERRRSY ANVTAADSSG RAYCVYSSDA STAYGVSALL LLLAAQAVAM AATRCFCCGR GLSPGRWRAW SGTCFIICWL
101: RRVTFVIAEL CLLAGSVRNA YHTKYVSLFS NAPPRCAVLR RGVFAAGAAF AFLTALLAEL HYLFYARARA AAAVPPPIVG GIGMTRM

Best Arabidopsis Sequence Match ( AT1G52910.1 )
(BLAST)

001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY

Arabidopsis Description

At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.