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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 6
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d026625_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 86.89 85.03
Os04t0678200-01 Rice plasma membrane 80.87 80.87
TraesCS2A01G591700.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 68.85 70.39
TraesCS2D01G562500.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 69.4 69.02
TraesCS2B01G592000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 68.31 67.93
VIT_19s0014g03190.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 61.2 60.54
EER98474 Sorghum endoplasmic reticulum, plasma membrane, vacuole 56.83 56.22
TraesCS2A01G591800.1 Wheat extracellular 31.69 55.77
KRH22133 Soybean extracellular, plasma membrane, vacuole 54.64 54.05
AT4G27435.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 50.27 53.18
CDY29310 Canola endoplasmic reticulum, plasma membrane, vacuole 50.27 53.18
KRH27207 Soybean endoplasmic reticulum 53.55 52.97
CDX89250 Canola endoplasmic reticulum, plasma membrane, vacuole 49.73 52.6
Bra026350.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 49.73 52.6
VIT_00s0652g00020.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 51.91 52.49
PGSC0003DMT400057628 Potato extracellular, plasma membrane, vacuole 51.37 51.65
PGSC0003DMT400032432 Potato endoplasmic reticulum, plasma membrane, vacuole 52.46 51.61
Solyc07g063340.2.1 Tomato nucleus 52.46 51.61
CDX92831 Canola endoplasmic reticulum, extracellular, vacuole 48.63 51.45
Bra019050.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 48.63 51.45
KRH49998 Soybean endoplasmic reticulum, extracellular, vacuole 51.37 51.37
KRH25778 Soybean extracellular 22.4 51.25
PGSC0003DMT400039574 Potato extracellular, plasma membrane, vacuole 51.91 51.08
CDY29839 Canola endoplasmic reticulum, extracellular, vacuole 48.09 50.87
Solyc02g078630.2.1 Tomato extracellular, plasma membrane, vacuole 50.27 50.55
KRH55341 Soybean endoplasmic reticulum, extracellular, vacuole 25.68 50.54
CDY53808 Canola endoplasmic reticulum, extracellular, vacuole 48.09 50.29
CDY26029 Canola endoplasmic reticulum, extracellular, vacuole 48.09 50.29
CDY02534 Canola endoplasmic reticulum, extracellular, vacuole 48.09 50.29
Bra019000.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 48.09 50.29
Solyc12g013650.1.1 Tomato extracellular, plasma membrane, vacuole 50.82 50.0
AT1G61065.1 Thale cress endoplasmic reticulum, extracellular, vacuole 49.18 50.0
Bra030968.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 38.8 48.63
Bra027240.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 46.45 48.57
AT3G15480.1 Thale cress endoplasmic reticulum, extracellular, vacuole 46.45 48.57
AT1G52910.1 Thale cress endoplasmic reticulum, extracellular, vacuole 46.45 48.57
CDY56821 Canola endoplasmic reticulum, extracellular, vacuole 45.9 48.0
OQU91983 Sorghum extracellular 21.31 47.56
CDY67483 Canola extracellular 46.45 47.22
CDY50209 Canola extracellular 46.45 47.22
KRH20498 Soybean endoplasmic reticulum, extracellular 46.99 46.99
CDX97672 Canola endoplasmic reticulum, plasma membrane, vacuole 43.72 45.71
EER94009 Sorghum endoplasmic reticulum, plasma membrane 46.45 45.21
Bra031458.1-P Field mustard extracellular 20.77 44.19
PGSC0003DMT400039595 Potato extracellular, mitochondrion 33.33 43.26
EES14816 Sorghum plasma membrane 44.81 41.21
EER88397 Sorghum endoplasmic reticulum, plasma membrane, vacuole 42.62 41.05
CDY52490 Canola extracellular 19.13 40.7
KRH13651 Soybean endoplasmic reticulum, extracellular 23.5 38.39
Protein Annotations
EnsemblPlants:EES11652EnsemblPlantsGene:SORBI_3006G267700EntrezGene:8085874GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:DUF1218PANTHER:PTHR31769PANTHER:PTHR31769:SF18PFAM:PF06749ProteinID:EES11652ProteinID:EES11652.1
RefSeq:XP_002447324.1SEG:segSignalP:SignalP-TMTMHMM:TMhelixunigene:Sbi.260UniParc:UPI0001A8731C
UniProt:C5YAJ4MapMan:35.2::::
Description
hypothetical protein
Coordinates
chr6:+:60089019..60091387
Molecular Weight (calculated)
19684.4 Da
IEP (calculated)
9.287
GRAVY (calculated)
0.745
Length
183 amino acids
Sequence
(BLAST)
001: MASIIIIAVV LVLDVLAFVL AIGAERRRSY AYVSVDSNAR GYCVYSSDAS TAYGVSALLL LLAAQAVAMV ATRCFCCGRA LSPGRRRAWS GICFIVCWVT
101: FVIAELCLLA GSVRNAYHTK YTTLFSKGPP QCAMLRKGVF AAGAAFTFLT ALFTELHYLF YARARDAADV PPPIVGGIGM TRM
Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.