CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026350.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	98.84	98.84
CDY29310	Canola	endoplasmic reticulum, plasma membrane, vacuole	98.84	98.84
AT4G27435.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	96.53	96.53
CDX92831	Canola	endoplasmic reticulum, extracellular, vacuole	93.64	93.64
CDY29839	Canola	endoplasmic reticulum, extracellular, vacuole	92.49	92.49
CDY26029	Canola	endoplasmic reticulum, extracellular, vacuole	64.16	63.43
CDY56821	Canola	endoplasmic reticulum, extracellular, vacuole	63.58	62.86
CDY53808	Canola	endoplasmic reticulum, extracellular, vacuole	63.58	62.86
CDY02534	Canola	endoplasmic reticulum, extracellular, vacuole	63.01	62.29
CDX97672	Canola	endoplasmic reticulum, plasma membrane, vacuole	61.27	60.57
CDY50209	Canola	extracellular	53.18	51.11
CDY67483	Canola	extracellular	53.18	51.11
Os04t0678200-01	Rice	plasma membrane	53.76	50.82
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	52.6	49.73
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	52.02	48.13
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.66	44.13
CDY52490	Canola	extracellular	21.39	43.02
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.66	42.93
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.66	42.93
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.24	42.33
TraesCS2A01G591800.1	Wheat	extracellular	22.54	37.5
CDY01897	Canola	extracellular	42.77	37.19
CDX96039	Canola	extracellular	42.77	37.19
CDY19370	Canola	plasma membrane, plastid	46.24	32.39

Protein Annotations

EnsemblPlants:CDX89250	EnsemblPlantsGene:GSBRNA2T00149451001	GO:A0A078DJ88	InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39
PFAM:PF06749	ProteinID:CDX89250	ProteinID:CDX89250.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0001B63E1C	MapMan:35.2	:	:	:	:

Description

BnaA01g16430D

Coordinates

chrLK031858:-:456356..457806

Molecular Weight (calculated)

19039.2 Da

IEP (calculated)

8.562

GRAVY (calculated)

0.627

Length

173 amino acids

Sequence
(BLAST)

001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST AKVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQFLIM LVSRCFCCGK PLKPGGSRAL ALVLFIVSWI
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYSSAAAASL SPY

Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)

001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY

Arabidopsis Description

At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.