CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027240.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	94.29	94.29
CDY56821	Canola	endoplasmic reticulum, extracellular, vacuole	93.14	93.14
AT3G15480.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	86.29	86.29
CDY53808	Canola	endoplasmic reticulum, extracellular, vacuole	84.57	84.57
CDY26029	Canola	endoplasmic reticulum, extracellular, vacuole	84.0	84.0
CDY02534	Canola	endoplasmic reticulum, extracellular, vacuole	81.14	81.14
CDX89250	Canola	endoplasmic reticulum, plasma membrane, vacuole	60.57	61.27
CDY29310	Canola	endoplasmic reticulum, plasma membrane, vacuole	60.57	61.27
CDX92831	Canola	endoplasmic reticulum, extracellular, vacuole	58.86	59.54
CDY29839	Canola	endoplasmic reticulum, extracellular, vacuole	58.29	58.96
CDY50209	Canola	extracellular	51.43	50.0
CDY67483	Canola	extracellular	51.43	50.0
Os04t0678200-01	Rice	plasma membrane	46.86	44.81
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	46.86	43.85
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	45.71	43.72
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.0	43.02
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.0	41.85
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.0	41.85
TraesCS2A01G591800.1	Wheat	extracellular	23.43	39.42
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.14	38.1
CDY52490	Canola	extracellular	18.29	37.21
CDY01897	Canola	extracellular	38.86	34.17
CDX96039	Canola	extracellular	38.86	34.17
CDY19370	Canola	plasma membrane, plastid	41.71	29.55

Protein Annotations

EnsemblPlants:CDX97672	EnsemblPlantsGene:GSBRNA2T00104907001	GO:A0A078E9H5	InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39
PFAM:PF06749	ProteinID:CDX97672	ProteinID:CDX97672.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0004EEE9EA	MapMan:35.2	:	:	:	:

Description

BnaA05g24070D

Coordinates

chrLK031900:-:872901..874259

Molecular Weight (calculated)

19304.8 Da

IEP (calculated)

8.672

GRAVY (calculated)

0.590

Length

175 amino acids

Sequence
(BLAST)

001: MASKLVVIIV FILDLIAVGL AIAAEQRRSV GKVVTDTEKT YEYCVYGTDI ATSYGAGAFL LLFISQVLIM SASRCFCCGK SLNPGGSRAC ALLLFLICCL
101: YNFQIVVCLL AASIRNAYHT KYRKMWNIDN PPSCEVIRKG VFAAGAAFTL FTAIVSQFYY VCYSRARDAY QNPSY

Best Arabidopsis Sequence Match ( AT3G15480.1 )
(BLAST)

001: MASKLVVIIV FILDLIAVGL AIAAEQRRSV GKVETDRDKQ YDYCVYGTDI ATSYGAGAFV LLFVSQVLIM AASRCFCCGK SLNPGGSRAC AIILFLICWV
101: FFLIAEMCLL AASIRNAYHT QYRKMWKVED PPSCEVIRKG VFAAGAAFTL FTAIVSQFYY VCYSRARDAY QNPSY

Arabidopsis Description

AT3g15480/MJK13_14 [Source:UniProtKB/TrEMBL;Acc:Q9LDK1]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.