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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY53808 Canola endoplasmic reticulum, extracellular, vacuole 99.43 99.43
CDY02534 Canola endoplasmic reticulum, extracellular, vacuole 96.0 96.0
AT1G52910.1 Thale cress endoplasmic reticulum, extracellular, vacuole 89.14 89.14
CDY56821 Canola endoplasmic reticulum, extracellular, vacuole 85.71 85.71
CDX97672 Canola endoplasmic reticulum, plasma membrane, vacuole 84.0 84.0
CDX89250 Canola endoplasmic reticulum, plasma membrane, vacuole 63.43 64.16
CDY29310 Canola endoplasmic reticulum, plasma membrane, vacuole 63.43 64.16
CDX92831 Canola endoplasmic reticulum, extracellular, vacuole 61.71 62.43
CDY29839 Canola endoplasmic reticulum, extracellular, vacuole 61.14 61.85
CDY50209 Canola extracellular 54.29 52.78
CDY67483 Canola extracellular 54.29 52.78
EES11652 Sorghum endoplasmic reticulum, extracellular, vacuole 50.29 48.09
Zm00001d026625_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 50.29 47.06
Os04t0678200-01 Rice plasma membrane 48.0 45.9
TraesCS2A01G591700.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 46.29 45.25
TraesCS2B01G592000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 46.86 44.57
TraesCS2D01G562500.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 46.29 44.02
CDY52490 Canola extracellular 21.14 43.02
TraesCS2A01G591800.1 Wheat extracellular 24.0 40.38
CDX97989 Canola endoplasmic reticulum, extracellular, plasma membrane 43.43 40.21
CDX96039 Canola extracellular 42.86 37.69
CDY01897 Canola extracellular 42.29 37.19
CDY19370 Canola plasma membrane, plastid 44.0 31.17
Protein Annotations
EnsemblPlants:CDY26029EnsemblPlantsGene:GSBRNA2T00033570001GO:A0A078GLE0GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:DUF1218PANTHER:PTHR31769PANTHER:PTHR31769:SF39PFAM:PF06749ProteinID:CDY26029ProteinID:CDY26029.1
SEG:segSignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0004EF4719UniProt:A0A078GLE0MapMan:35.2
Description
BnaC06g05950DBnaC06g05950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLE0]
Coordinates
chrLK032184:-:343741..344907
Molecular Weight (calculated)
19389.0 Da
IEP (calculated)
8.615
GRAVY (calculated)
0.569
Length
175 amino acids
Sequence
(BLAST)
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDKEKV YEYCEYGSDI ATSYGAGAFV LLLTSQVIIM VASRCFCCGK ALNPGGSRAC AIMLFLICWV
101: FFLIAEICLL AASIRNAYHT KYRKMWNIDN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY VCYSRARDDY KNPPY
Best Arabidopsis Sequence Match ( AT1G52910.1 )
(BLAST)
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
Arabidopsis Description
At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.