Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY53808 | Canola | endoplasmic reticulum, extracellular, vacuole | 99.43 | 99.43 |
CDY02534 | Canola | endoplasmic reticulum, extracellular, vacuole | 96.0 | 96.0 |
AT1G52910.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 89.14 | 89.14 |
CDY56821 | Canola | endoplasmic reticulum, extracellular, vacuole | 85.71 | 85.71 |
CDX97672 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 84.0 | 84.0 |
CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 63.43 | 64.16 |
CDY29310 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 63.43 | 64.16 |
CDX92831 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.71 | 62.43 |
CDY29839 | Canola | endoplasmic reticulum, extracellular, vacuole | 61.14 | 61.85 |
CDY50209 | Canola | extracellular | 54.29 | 52.78 |
CDY67483 | Canola | extracellular | 54.29 | 52.78 |
EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 50.29 | 48.09 |
Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 50.29 | 47.06 |
Os04t0678200-01 | Rice | plasma membrane | 48.0 | 45.9 |
TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 46.29 | 45.25 |
TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 46.86 | 44.57 |
TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 46.29 | 44.02 |
CDY52490 | Canola | extracellular | 21.14 | 43.02 |
TraesCS2A01G591800.1 | Wheat | extracellular | 24.0 | 40.38 |
CDX97989 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 43.43 | 40.21 |
CDX96039 | Canola | extracellular | 42.86 | 37.69 |
CDY01897 | Canola | extracellular | 42.29 | 37.19 |
CDY19370 | Canola | plasma membrane, plastid | 44.0 | 31.17 |
Protein Annotations
EnsemblPlants:CDY26029 | EnsemblPlantsGene:GSBRNA2T00033570001 | GO:A0A078GLE0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:DUF1218 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | ProteinID:CDY26029 | ProteinID:CDY26029.1 |
SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EF4719 | UniProt:A0A078GLE0 | MapMan:35.2 |
Description
BnaC06g05950DBnaC06g05950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLE0]
Coordinates
chrLK032184:-:343741..344907
Molecular Weight (calculated)
19389.0 Da
IEP (calculated)
8.615
GRAVY (calculated)
0.569
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDKEKV YEYCEYGSDI ATSYGAGAFV LLLTSQVIIM VASRCFCCGK ALNPGGSRAC AIMLFLICWV
101: FFLIAEICLL AASIRNAYHT KYRKMWNIDN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY VCYSRARDDY KNPPY
101: FFLIAEICLL AASIRNAYHT KYRKMWNIDN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY VCYSRARDDY KNPPY
001: MASKLVIIIV FILDLIAVGL AIAAEQRRSV GKVVPDGEKE FEHCEYGSDI ATSYGAGAFV LLFISQVIIM VASRCFCCGK ALKPGGSRAC GIMLFLICWV
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
101: FFLIAEVCLL AGSIRNAYHT TYRRMWNIEN PPSCEVIRKG VFAAGASFAL FTAIVSQFYY ISYSRARDGY QTPHY
Arabidopsis Description
At1g52910 [Source:UniProtKB/TrEMBL;Acc:Q9C930]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.