CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019050.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	99.42	99.42
CDX92831	Canola	endoplasmic reticulum, extracellular, vacuole	97.69	97.69
CDY29310	Canola	endoplasmic reticulum, plasma membrane, vacuole	93.06	93.06
CDX89250	Canola	endoplasmic reticulum, plasma membrane, vacuole	92.49	92.49
AT4G27435.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	92.49	92.49
CDY53808	Canola	endoplasmic reticulum, extracellular, vacuole	61.85	61.14
CDY26029	Canola	endoplasmic reticulum, extracellular, vacuole	61.85	61.14
CDY56821	Canola	endoplasmic reticulum, extracellular, vacuole	61.27	60.57
CDY02534	Canola	endoplasmic reticulum, extracellular, vacuole	60.69	60.0
CDX97672	Canola	endoplasmic reticulum, plasma membrane, vacuole	58.96	58.29
Os04t0678200-01	Rice	plasma membrane	53.76	50.82
CDY50209	Canola	extracellular	52.6	50.56
CDY67483	Canola	extracellular	52.6	50.56
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	50.87	48.09
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	49.71	45.99
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.09	43.58
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.09	42.39
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.09	42.39
CDY52490	Canola	extracellular	20.81	41.86
CDX97989	Canola	endoplasmic reticulum, extracellular, plasma membrane	45.09	41.27
CDY01897	Canola	extracellular	42.77	37.19
CDX96039	Canola	extracellular	42.77	37.19
TraesCS2A01G591800.1	Wheat	extracellular	21.97	36.54
CDY19370	Canola	plasma membrane, plastid	45.09	31.58

Protein Annotations

EnsemblPlants:CDY29839	EnsemblPlantsGene:GSBRNA2T00044274001	GO:A0A078GXH5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39	PFAM:PF06749	ProteinID:CDY29839	ProteinID:CDY29839.1
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0001B63E1B	UniProt:A0A078GXH5	MapMan:35.2	:

Description

BnaA03g48600DBnaA03g48600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXH5]

Coordinates

chrLK032245:+:13192..14525

Molecular Weight (calculated)

19118.2 Da

IEP (calculated)

8.091

GRAVY (calculated)

0.552

Length

173 amino acids

Sequence
(BLAST)

001: MASKIVSAIV FVFNLVAFGL AVAAEQRRST ATVMQDTEVQ YNYCVYDSDR ATGYGIGAFF FSVASQLLIM LVSRCFCCGK PLKPGGSRAL ALVLFVVSWM
101: FFLIAETCLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFIFF NAIVSQFYYF FYSSAAEASP LPY

Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)

001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY

Arabidopsis Description

At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.