Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29310 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 96.53 | 96.53 |
| CDX89250 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 96.53 | 96.53 |
| Bra026350.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 95.95 | 95.95 |
| CDX92831 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.64 | 93.64 |
| CDY29839 | Canola | endoplasmic reticulum, extracellular, vacuole | 92.49 | 92.49 |
| Bra019050.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 91.91 | 91.91 |
| AT1G52910.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 60.69 | 60.0 |
| AT3G15480.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 60.69 | 60.0 |
| AT1G61065.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 55.49 | 53.33 |
| Os04t0678200-01 | Rice | plasma membrane | 53.76 | 50.82 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 53.18 | 50.27 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 51.45 | 47.59 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.51 | 43.02 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.51 | 41.85 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.51 | 41.85 |
| AT1G13380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 45.09 | 41.49 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 22.54 | 37.5 |
| AT1G68220.1 | Thale cress | extracellular | 38.73 | 33.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828852 | UniProt:A0A178V2T8 | ProteinID:AEE85341.1 | EMBL:AF458340 | ArrayExpress:AT4G27435 |
| EnsemblPlantsGene:AT4G27435 | RefSeq:AT4G27435 | TAIR:AT4G27435 | RefSeq:AT4G27435-TAIR-G | EnsemblPlants:AT4G27435.1 | TAIR:AT4G27435.1 |
| EMBL:AY054257 | InterPro:DUF1218 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_567774.1 | ProteinID:OAO99372.1 | PFAM:PF06749 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005352 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 |
| UniProt:Q940M6 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00000A62C5 | SEG:seg | : |
Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
Coordinates
chr4:+:13723610..13725359
Molecular Weight (calculated)
19183.4 Da
IEP (calculated)
8.344
GRAVY (calculated)
0.610
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.