Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004290.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 89.05 | 89.95 |
| CDX96039 | Canola | extracellular | 89.05 | 89.95 |
| CDY01897 | Canola | extracellular | 89.05 | 89.95 |
| VIT_01s0011g04020.t01 | Wine grape | extracellular | 64.18 | 66.84 |
| PGSC0003DMT400078545 | Potato | extracellular | 61.69 | 63.92 |
| Solyc05g008900.2.1 | Tomato | extracellular | 60.7 | 62.89 |
| KRH35900 | Soybean | extracellular | 59.7 | 61.54 |
| EES14816 | Sorghum | plasma membrane | 49.25 | 49.75 |
| Zm00001d050182_P001 | Maize | plasma membrane | 48.76 | 49.25 |
| Zm00001d024066_P001 | Maize | plasma membrane | 48.76 | 49.25 |
| TraesCS7A01G022500.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 48.26 | 48.5 |
| Os08t0261100-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 46.77 | 47.24 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 56.72 | 44.36 |
| TraesCS7D01G019700.1 | Wheat | plasma membrane | 48.26 | 43.5 |
| TraesCS4A01G470000.1 | Wheat | endoplasmic reticulum | 48.26 | 42.92 |
| AT3G15480.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 36.32 | 41.71 |
| AT1G52910.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 35.82 | 41.14 |
| AT1G61065.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 35.32 | 39.44 |
| AT4G27435.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 33.33 | 38.73 |
| AT1G13380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 35.82 | 38.3 |
| HORVU7Hr1G002450.1 | Barley | plastid | 48.76 | 37.84 |
| HORVU1Hr1G013960.1 | Barley | extracellular | 18.91 | 34.55 |
Protein Annotations
| MapMan:35.2 | EntrezGene:843151 | UniProt:A0A178W4G9 | ProteinID:AAG52607.1 | ProteinID:AEE34766.1 | ArrayExpress:AT1G68220 |
| EnsemblPlantsGene:AT1G68220 | RefSeq:AT1G68220 | TAIR:AT1G68220 | RefSeq:AT1G68220-TAIR-G | EnsemblPlants:AT1G68220.1 | TAIR:AT1G68220.1 |
| EMBL:AY042901 | EMBL:AY072476 | EMBL:AY086320 | InterPro:DUF1218 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564925.1 | ProteinID:OAP12591.1 |
| PFAM:PF06749 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF3 | UniProt:Q9C9F7 | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI000009FFC0 | : | : | : | : | : |
Description
Aerobic coproporphyrinogen-III oxidase (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q9C9F7]
Coordinates
chr1:+:25570092..25571733
Molecular Weight (calculated)
21411.9 Da
IEP (calculated)
8.199
GRAVY (calculated)
0.392
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.