Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g06410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68220.1 | VIT_01s0011g06410.t01 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078545 | Potato | extracellular | 75.65 | 75.26 |
| Solyc05g008900.2.1 | Tomato | extracellular | 75.13 | 74.74 |
| KRH35900 | Soybean | extracellular | 70.47 | 69.74 |
| CDX96039 | Canola | extracellular | 70.47 | 68.34 |
| Bra004290.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 68.91 | 66.83 |
| CDY01897 | Canola | extracellular | 68.91 | 66.83 |
| AT1G68220.1 | Thale cress | extracellular | 66.84 | 64.18 |
| TraesCS7A01G022500.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 55.96 | 54.0 |
| EES14816 | Sorghum | plasma membrane | 55.44 | 53.77 |
| Os08t0261100-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 55.44 | 53.77 |
| Zm00001d050182_P001 | Maize | plasma membrane | 54.92 | 53.27 |
| Zm00001d024066_P001 | Maize | plasma membrane | 54.4 | 52.76 |
| TraesCS7D01G019700.1 | Wheat | plasma membrane | 55.96 | 48.43 |
| TraesCS4A01G470000.1 | Wheat | endoplasmic reticulum | 55.96 | 47.79 |
| VIT_19s0014g03190.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 45.08 | 47.03 |
| VIT_00s0652g00020.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 43.52 | 46.41 |
| GSMUA_Achr1P21230_001 | Banana | golgi, plasma membrane, vacuole | 61.14 | 45.91 |
| VIT_01s0011g03560.t01 | Wine grape | extracellular | 43.01 | 43.68 |
| HORVU7Hr1G002450.1 | Barley | plastid | 55.44 | 41.31 |
| HORVU1Hr1G013960.1 | Barley | extracellular | 21.76 | 38.18 |
Protein Annotations
| EntrezGene:100249231 | wikigene:100249231 | MapMan:35.2 | UniProt:A5BKM2 | EMBL:AM462757 | ProteinID:CAN76984 |
| ProteinID:CAN76984.1 | ProteinID:CBI26977 | ProteinID:CBI26977.3 | InterPro:DUF1218 | EMBL:FN595752 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100249231 | wikigene:LOC100249231 |
| PFAM:PF06749 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF3 | SignalP:SignalP-TM | TIGR:TC52963 | TMHMM:TMhelix |
| UniParc:UPI000152150D | ArrayExpress:VIT_01s0011g04020 | EnsemblPlantsGene:VIT_01s0011g04020 | EnsemblPlants:VIT_01s0011g04020.t01 | RefSeq:XP_002282799 | RefSeq:XP_002282799.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:3675540..3676887
Molecular Weight (calculated)
20734.1 Da
IEP (calculated)
9.005
GRAVY (calculated)
0.355
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSVSLMAI IISLHLIAFV LAVGSERRRS TAKVVPDKYD ERTYCVYSTD ASTVYGLTAF GLLLISQTVL NGVTKCLCFG RGLIGGGSTT CAVFFFIFSW
101: VSFLGAEACL LAGSAKNAYH TKYRGVFGGQ DLSCATLRKG VFAAGAALSL LSLLGSILYY WAHSRADTGG WEKHRSEGLG MTQQQQNNEF GKL
101: VSFLGAEACL LAGSAKNAYH TKYRGVFGGQ DLSCATLRKG VFAAGAALSL LSLLGSILYY WAHSRADTGG WEKHRSEGLG MTQQQQNNEF GKL
001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
Arabidopsis Description
Aerobic coproporphyrinogen-III oxidase (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q9C9F7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.