Factsheet for VIT_00s0652g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6
peroxisome 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, nucleus, peroxisome, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078630.2.1	Tomato	extracellular, plasma membrane, vacuole	73.48	73.08
PGSC0003DMT400057628	Potato	extracellular, plasma membrane, vacuole	72.93	72.53
KRH49998	Soybean	endoplasmic reticulum, extracellular, vacuole	70.17	69.4
VIT_19s0014g03190.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	70.72	69.19
AT1G61065.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	67.96	68.33
KRH20498	Soybean	endoplasmic reticulum, extracellular	67.4	66.67
CDY50209	Canola	extracellular	63.54	63.89
CDY67483	Canola	extracellular	63.54	63.89
KRH25778	Soybean	extracellular	27.62	62.5
KRH13651	Soybean	endoplasmic reticulum, extracellular	35.36	57.14
Os04t0678200-01	Rice	plasma membrane	54.14	53.55
EES11652	Sorghum	endoplasmic reticulum, extracellular, vacuole	52.49	51.91
Zm00001d026625_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	53.04	51.34
TraesCS2A01G591700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.28	50.84
TraesCS2B01G592000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.83	50.0
TraesCS2D01G562500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.28	49.46
Bra031458.1-P	Field mustard	extracellular	23.2	48.84
CDY52490	Canola	extracellular	22.65	47.67
VIT_01s0011g03560.t01	Wine grape	extracellular	49.72	47.37
VIT_01s0011g04020.t01	Wine grape	extracellular	46.41	43.52
TraesCS2A01G591800.1	Wheat	extracellular	21.55	37.5

Protein Annotations

EntrezGene:100263752	wikigene:100263752	MapMan:35.2	ProteinID:CBI29530	ProteinID:CBI29530.3	UniProt:D7TGA7
InterPro:DUF1218	EMBL:FN595806	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100263752
wikigene:LOC100263752	PFAM:PF06749	PANTHER:PTHR31769	PANTHER:PTHR31769:SF16	SignalP:SignalP-TM	TIGR:TC53474
TMHMM:TMhelix	UniParc:UPI00015CE5B2	ArrayExpress:VIT_00s0652g00020	EnsemblPlantsGene:VIT_00s0652g00020	EnsemblPlants:VIT_00s0652g00020.t01	RefSeq:XP_002271088
RefSeq:XP_002271088.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:33587059..33589243

Molecular Weight (calculated)

19587.9 Da

IEP (calculated)

8.382

GRAVY (calculated)

0.450

Length

181 amino acids

Sequence
(BLAST)

001: MASTLLLVIV LVLDLIAFAL AVAAEQRRNT ANIRKDASDR NYCHYDSDIA TGLGVGALLF LLGSQLLIMV ASRCLCCGRA LKPGRSRACA ITLFITCWVT
101: FFIAEVCLLA GSVRNAYHTK YALSQELSSC ETLRKGVFGA GAAFIVFTGI LSELYYVSYS NANDGQAPYN KDTGVRMGTY N

Best Arabidopsis Sequence Match ( AT1G61065.1 )
(BLAST)

001: MASVLLLLLV FVFDLIAFGL AVAAEQRRTT WQISRESRDL SYCVYDKDIA TGLGVGSFLV LLASQLLIMV ASRCLCCGRA LTPSGSRSWA IFLFITTWVF
101: FFIAQVCLLA GSVRNAYHTK YRVYFGNTSP SCRSLRKGVF GAGAAFIVLT GIVSELYYVT LSRAKDFQPS RDPGIRMSSL

Arabidopsis Description

1,3-beta-glucan synthase component (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q8W576]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.