Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50209 | Canola | extracellular | 84.44 | 84.44 |
| CDY67483 | Canola | extracellular | 84.44 | 84.44 |
| Solyc02g078630.2.1 | Tomato | extracellular, plasma membrane, vacuole | 70.56 | 69.78 |
| PGSC0003DMT400057628 | Potato | extracellular, plasma membrane, vacuole | 70.56 | 69.78 |
| VIT_00s0652g00020.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 68.33 | 67.96 |
| KRH49998 | Soybean | endoplasmic reticulum, extracellular, vacuole | 67.78 | 66.67 |
| KRH20498 | Soybean | endoplasmic reticulum, extracellular | 64.44 | 63.39 |
| Bra031458.1-P | Field mustard | extracellular | 29.44 | 61.63 |
| CDY52490 | Canola | extracellular | 28.33 | 59.3 |
| KRH25778 | Soybean | extracellular | 25.0 | 56.25 |
| AT4G27435.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 53.33 | 55.49 |
| AT3G15480.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 53.33 | 54.86 |
| KRH13651 | Soybean | endoplasmic reticulum, extracellular | 33.33 | 53.57 |
| AT1G52910.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 51.67 | 53.14 |
| Os04t0678200-01 | Rice | plasma membrane | 50.0 | 49.18 |
| EES11652 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 50.0 | 49.18 |
| TraesCS2A01G591700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 47.22 | 47.49 |
| TraesCS2B01G592000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 47.22 | 46.2 |
| TraesCS2D01G562500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 47.22 | 46.2 |
| Zm00001d026625_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 47.78 | 45.99 |
| AT1G13380.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 41.67 | 39.89 |
| AT1G68220.1 | Thale cress | extracellular | 39.44 | 35.32 |
| TraesCS2A01G591800.1 | Wheat | extracellular | 19.44 | 33.65 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842398 | ProteinID:AEE33773.1 | EMBL:AF419584 | ArrayExpress:AT1G61065 | EnsemblPlantsGene:AT1G61065 |
| RefSeq:AT1G61065 | TAIR:AT1G61065 | RefSeq:AT1G61065-TAIR-G | EnsemblPlants:AT1G61065.1 | TAIR:AT1G61065.1 | EMBL:AY079109 |
| InterPro:DUF1218 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564769.1 |
| PFAM:PF06749 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31769 | PANTHER:PTHR31769:SF16 | UniProt:Q8W576 | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI00000A5F9E | SEG:seg | : | : | : | : |
Description
1,3-beta-glucan synthase component (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q8W576]
Coordinates
chr1:-:22490221..22491539
Molecular Weight (calculated)
19866.5 Da
IEP (calculated)
9.724
GRAVY (calculated)
0.598
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVLLLLLV FVFDLIAFGL AVAAEQRRTT WQISRESRDL SYCVYDKDIA TGLGVGSFLV LLASQLLIMV ASRCLCCGRA LTPSGSRSWA IFLFITTWVF
101: FFIAQVCLLA GSVRNAYHTK YRVYFGNTSP SCRSLRKGVF GAGAAFIVLT GIVSELYYVT LSRAKDFQPS RDPGIRMSSL
101: FFIAQVCLLA GSVRNAYHTK YRVYFGNTSP SCRSLRKGVF GAGAAFIVLT GIVSELYYVT LSRAKDFQPS RDPGIRMSSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.