Factsheet for GSMUA_Achr1P21230_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
mitochondrion 1
golgi 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68220.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078545	Potato	extracellular	49.03	64.95
Solyc05g008900.2.1	Tomato	extracellular	48.64	64.43
VIT_01s0011g04020.t01	Wine grape	extracellular	45.91	61.14
KRH35900	Soybean	extracellular	45.91	60.51
TraesCS7A01G022500.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	46.69	60.0
EES14816	Sorghum	plasma membrane	45.91	59.3
CDX96039	Canola	extracellular	45.14	58.29
Zm00001d024066_P001	Maize	plasma membrane	45.14	58.29
Os08t0261100-01	Rice	endoplasmic reticulum, extracellular, plasma membrane	45.14	58.29
Zm00001d050182_P001	Maize	plasma membrane	44.75	57.79
CDY01897	Canola	extracellular	44.75	57.79
Bra004290.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	44.36	57.29
AT1G68220.1	Thale cress	extracellular	44.36	56.72
TraesCS4A01G470000.1	Wheat	endoplasmic reticulum	47.08	53.54
TraesCS7D01G019700.1	Wheat	plasma membrane	46.3	53.36
GSMUA_Achr4P29970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	35.8	49.46
GSMUA_Achr5P12000_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	34.63	48.37
HORVU7Hr1G002450.1	Barley	plastid	48.25	47.88
GSMUA_Achr8P13790_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	33.07	46.45
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	31.52	43.09
HORVU1Hr1G013960.1	Barley	extracellular	18.29	42.73
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	27.63	34.13
GSMUA_Achr1P00070_001	Banana	plasma membrane	35.8	20.04

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21230_001	EnsemblPlants:GSMUA_Achr1T21230_001	EnsemblPlantsGene:GSMUA_Achr1G21230_001	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF3	PFAM:PF06749
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002951ED4	UniProt:M0S1T1	MapMan:35.2	:

Description

fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G21230_001]

Coordinates

chr1:-:15990514..16000141

Molecular Weight (calculated)

27278.4 Da

IEP (calculated)

9.679

GRAVY (calculated)

0.440

Length

257 amino acids

Sequence
(BLAST)

001: MDPKRSGVWV VEGGKAKLGY VISSYFLSYR KEKAKGKAKG KALFFLAICL TVVVAAAGMA GISVIVVVVV AFLHILAFVL AIGAEMRRST GKVVPDEYDE
101: RTFCAYDSDA STAYGLSAFG LLLLSQAVVS AATRCLCFGR GLSAGGPRTC AIASFVVSWI SFLVAEVCLL AGSARNAYHT KYVGYFAKKD LSSCTALRKG
201: VFAAGATFVL LSMISSLLYY WSYSKADMGG WVKHQNEGGV GMAEFGPEKR GLGNTNG

Best Arabidopsis Sequence Match ( AT1G68220.1 )
(BLAST)

001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V

Arabidopsis Description

Aerobic coproporphyrinogen-III oxidase (DUF1218) [Source:UniProtKB/TrEMBL;Acc:Q9C9F7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.