Factsheet for GSMUA_Achr5P12000_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P29970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	83.7	82.8
Os07t0462200-01	Rice	plasma membrane	69.02	68.65
EER98474	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	66.3	65.95
Zm00001d005394_P001	Maize	endoplasmic reticulum, extracellular, vacuole	65.76	65.41
Zm00001d019597_P001	Maize	plasma membrane	64.67	65.38
TraesCS3A01G415300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	65.22	64.17
TraesCS3B01G450500.1	Wheat	nucleus	64.13	63.78
HORVU3Hr1G092420.1	Barley	endoplasmic reticulum, extracellular, vacuole	64.13	63.78
HORVU3Hr1G009130.2	Barley	cytosol, extracellular	29.89	63.22
TraesCS3D01G411100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	64.13	63.1
GSMUA_Achr8P13790_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	58.7	59.02
OQU91983	Sorghum	extracellular	25.0	56.1
HORVU2Hr1G083540.5	Barley	endoplasmic reticulum, extracellular, vacuole	34.24	53.39
HORVU7Hr1G051440.1	Barley	extracellular	26.63	52.69
HORVU6Hr1G041520.3	Barley	endoplasmic reticulum, extracellular	34.24	51.22
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	52.17	51.06
HORVU4Hr1G054230.1	Barley	extracellular	29.35	45.0
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	47.28	41.83
GSMUA_Achr1P00070_001	Banana	plasma membrane	88.04	35.29
GSMUA_Achr1P21230_001	Banana	golgi, plasma membrane, vacuole	48.37	34.63

Protein Annotations

EnsemblPlants:GSMUA_Achr5P12000_001	EnsemblPlants:GSMUA_Achr5T12000_001	EnsemblPlantsGene:GSMUA_Achr5G12000_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39	PFAM:PF06749	SEG:seg	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI000295D4DA	UniProt:M0SXS9	MapMan:35.2	:	:

Description

fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G12000_001]

Coordinates

chr5:+:8698298..8699196

Molecular Weight (calculated)

19823.2 Da

IEP (calculated)

8.107

GRAVY (calculated)

0.670

Length

184 amino acids

Sequence
(BLAST)

001: MASKLILVLV FLFDVIAFGL AVAAEQRRST GKVVADSEDT YNYCVYDSDI ATGYGVGALL FLLLGQAILM VVSKCFCFGR SLGPGGPRAC ALLLFLLSWL
101: TFIIAEACLL AGSVRNAHHT RYRNMFFDSN LSCETVRKGV FGAGAAFVFF TAILSELYYV FYAKAARDSG TAPLGASVGM SSYH

Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)

001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY

Arabidopsis Description

At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.