Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G051440.1 | Barley | extracellular | 80.46 | 75.27 |
| HORVU2Hr1G083540.5 | Barley | endoplasmic reticulum, extracellular, vacuole | 96.55 | 71.19 |
| OQU91983 | Sorghum | extracellular | 57.47 | 60.98 |
| HORVU6Hr1G041520.3 | Barley | endoplasmic reticulum, extracellular | 85.06 | 60.16 |
| HORVU4Hr1G054230.1 | Barley | extracellular | 79.31 | 57.5 |
| HORVU3Hr1G092420.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 97.7 | 45.95 |
| Zm00001d019597_P001 | Maize | plasma membrane | 86.21 | 41.21 |
| Os07t0462200-01 | Rice | plasma membrane | 85.06 | 40.0 |
| Zm00001d005394_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 85.06 | 40.0 |
| EER98474 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 82.76 | 38.92 |
| GSMUA_Achr4P29970_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 70.11 | 32.8 |
| GSMUA_Achr5P12000_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 63.22 | 29.89 |
| HORVU1Hr1G013960.1 | Barley | extracellular | 33.33 | 26.36 |
| HORVU7Hr1G083180.1 | Barley | extracellular | 48.28 | 21.99 |
| HORVU7Hr1G002450.1 | Barley | plastid | 50.57 | 16.99 |
| GSMUA_Achr1P00070_001 | Banana | plasma membrane | 63.22 | 11.98 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G009130.2 | EnsemblPlantsGene:HORVU3Hr1G009130 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1218 |
| PANTHER:PTHR31769 | PANTHER:PTHR31769:SF39 | PFAM:PF06749 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B47E75D |
| UniProt:A0A287K295 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:19869315..19869685
Molecular Weight (calculated)
9285.4 Da
IEP (calculated)
7.828
GRAVY (calculated)
0.609
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: LNLFAFGLAV AAEQHRSKAT VTPDLAKEYD YCVYDSDVAT GYGVGALLLL TAAQVVVMLA SRCFCCGRGL KPGGSRACAL MLFLFSW
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
Arabidopsis Description
At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.