Factsheet for GSMUA_Achr4P29970_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 7
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12000_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	82.8	83.7
Os07t0462200-01	Rice	plasma membrane	69.89	70.27
HORVU3Hr1G009130.2	Barley	cytosol, extracellular	32.8	70.11
EER98474	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	66.13	66.49
TraesCS3A01G415300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	66.67	66.31
TraesCS3B01G450500.1	Wheat	nucleus	65.59	65.95
HORVU3Hr1G092420.1	Barley	endoplasmic reticulum, extracellular, vacuole	65.59	65.95
Zm00001d005394_P001	Maize	endoplasmic reticulum, extracellular, vacuole	65.59	65.95
Zm00001d019597_P001	Maize	plasma membrane	64.52	65.93
TraesCS3D01G411100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	65.59	65.24
GSMUA_Achr8P13790_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	61.29	62.3
HORVU2Hr1G083540.5	Barley	endoplasmic reticulum, extracellular, vacuole	36.56	57.63
HORVU7Hr1G051440.1	Barley	extracellular	28.49	56.99
OQU91983	Sorghum	extracellular	24.73	56.1
HORVU6Hr1G041520.3	Barley	endoplasmic reticulum, extracellular	35.48	53.66
GSMUA_Achr1P20960_001	Banana	endoplasmic reticulum, plasma membrane	53.76	53.19
HORVU4Hr1G054230.1	Barley	extracellular	30.65	47.5
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	47.85	42.79
GSMUA_Achr1P21230_001	Banana	golgi, plasma membrane, vacuole	49.46	35.8
GSMUA_Achr1P00070_001	Banana	plasma membrane	82.8	33.55

Protein Annotations

EnsemblPlants:GSMUA_Achr4P29970_001	EnsemblPlants:GSMUA_Achr4T29970_001	EnsemblPlantsGene:GSMUA_Achr4G29970_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1218	PANTHER:PTHR31769	PANTHER:PTHR31769:SF39	PFAM:PF06749	SEG:seg	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI000296A186	UniProt:M0STA9	MapMan:35.2	:	:

Description

fiber protein Fb34, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G29970_001]

Coordinates

chr4:+:27774237..27775503

Molecular Weight (calculated)

20027.5 Da

IEP (calculated)

8.651

GRAVY (calculated)

0.578

Length

186 amino acids

Sequence
(BLAST)

001: MASKLVLILV FVVDLIAFGL AVAAEQRRSK ATVVPDSEKT YNHCVYDSDI ATGYGVGAFL FLLLSQAILM AVSKCFCCGR SLGPGGPRAC ALLLFLFSWL
101: TFLIAEACLL AGSVRNAHHT RYRNMFFDGN LSCETVRKGV FAAGAAFVLF TAVLSELYYV YYAKAARSSG APPYGEAPAV GMSSYR

Best Arabidopsis Sequence Match ( AT4G27435.1 )
(BLAST)

001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY

Arabidopsis Description

At4g27438 [Source:UniProtKB/TrEMBL;Acc:Q940M6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.